Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-37 seq1 132 7e-26 >seq2 Length=1218010 Score = 170 bits (188), Expect = 3e-37 Identities = 565/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| | || |||||||| || || || |||| | ||| || | | Sbjct 85090 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 85149 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAAT 17983 ||| ||||||| ||||||| || || |||||| ||| || | | | | Sbjct 85150 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 85208 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAA-TTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| | ||| || || | |||||||| | || Sbjct 85209 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 85267 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| ||| || ||| | | | || | ||||||| ||| ||| || Sbjct 85268 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 85327 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| |||| ||| |||||| | ||| | | || ||||| |||||| || Sbjct 85328 TTGTTGTACTCTAGGAGCTGGTAATTTAA-ATTTAAGGGCTTT--ATATATTAAACAAGC 85384 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 ||| |||| || | ||||||||| | | || ||| ||| ||| ||| || | || | Sbjct 85385 AAAGTCAGCATGGAGACCTTCATCAC-GACTAATAAGTTCATTAGAAAATGTGAGTCCAG 85443 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 85444 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 85503 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 | ||||| |||| ||| | || | ||||||||||||| || | |||| Sbjct 85504 CTTCAACAGCACA-GAATCCAATAATTCTTTCAGCAAAA-------GATCGTTCAGAATT 85555 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||||| |||||||||| ||| | | ||| || || | Sbjct 85556 CATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTC 85615 Query 18397 AAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || | | ||| | |||||| ||| | ||||| | || || | || ||||| Sbjct 85616 AA--AGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAA 85673 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| |||||| ||| |||| || |||||| |||| || ||| || || || Sbjct 85674 GTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGT 85733 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| || || ||| || || || | || || || |||| || || ||| | Sbjct 85734 ATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCA 85793 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || ||||| || || ||||| || |||||| ||||| || || ||| | | ||| Sbjct 85794 GCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAA 85853 Query 18635 TCATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || |||| |||||| |||||||| ||||| | |||||| |||| ||| || | Sbjct 85854 TC-TCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 85912 Query 18694 TTTGTACATTTTATAAATATCTT 18716 ||| |||||| ||||||||| Sbjct 85913 TTTATACATTGACCAAATATCTT 85935 >seq1 Length=1295931 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| ||| | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 560370 AAGAAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAA 560311 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| |||| || || || || || || ||||| || ||||| ||||| Sbjct 560310 CCTTCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCT 560251 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | |||| | ||| || ||||| | |||||| |||||| |||| || Sbjct 560250 GATCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGAC 560191 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || ||||| || ||| | || | |||||||| || ||| | ||||||||||||| Sbjct 560190 TACAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGTGTAA 560133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871835328800