Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7 140 6e-28 seq2 140 6e-28 seq1 134 2e-26 >seq7 Length=879027 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | ||||||||||||||||||| |||||| ||| || || || Sbjct 570006 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 569947 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 569946 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 569887 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || ||||| || |||||||| | ||| Sbjct 569886 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 569827 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || || | || |||||||| Sbjct 569826 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 569777 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | ||||||||||||||||||| |||||| ||| || || || Sbjct 570923 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 570864 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 570863 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 570804 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || ||||| || |||||||| | ||| Sbjct 570803 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 570744 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || || | || |||||||| Sbjct 570743 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 570694 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||||| || ||||| |||||||| | |||||| ||| || ||||| Sbjct 569778 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 569719 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 569718 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 569659 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || || || ||||| || |||||||| | ||| Sbjct 569658 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 569599 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 172056 ||||| | ||| || || || || || || || |||| Sbjct 569598 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAA 569562 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||||| || ||||| |||||||| | |||||| ||| || ||||| Sbjct 570695 ATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 570636 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 570635 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 570576 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || || || ||||| || |||||||| | ||| Sbjct 570575 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 570516 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 172056 ||||| | ||| || || || || || || || |||| Sbjct 570515 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAA 570479 >seq2 Length=1218010 Score = 140 bits (154), Expect = 6e-28 Identities = 541/848 (64%), Gaps = 24/848 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| |||||| |||| | |||||||| ||||| ||||| |||| | ||| || | | Sbjct 85090 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 85149 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 38951 ||| ||||||| ||||| || || |||||| |||| || || | | | Sbjct 85150 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 85208 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 |||||||| || |||||||||| |||||| ||| | | | |||||||| ||||| Sbjct 85209 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACC-AATAAG 85267 Query 39012 TTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || | || | ||| || ||| | | |||| | ||| ||||||| | || || Sbjct 85268 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 85327 Query 39071 cataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAACAT 39128 | || || | | || ||||||| |||||| || ||||| |||||| Sbjct 85328 --TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAACAA 85382 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||||| || | ||| | |||||| || | | |||| ||||||| ||| || | ||| Sbjct 85383 GCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 85442 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | || Sbjct 85443 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATT 85502 Query 39249 CCCTCCACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||| | || ||| | || |||||| | |||| | || | || | | Sbjct 85503 CCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTCA---T 85558 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || | ||||| |||||||| ||||| | || |||| || |||| ||| Sbjct 85559 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 85618 Query 39368 TAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACATT 39425 | ||| | ||||| || Sbjct 85619 GAG--CATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 85676 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 ||| ||||| ||| |||| |||||||| | |||| | || ||||||| Sbjct 85677 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 85736 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 || | ||| || ||| | | |||| || || ||||| |||||| ||| || Sbjct 85737 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 85796 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 39605 ||||||||||| || ||||| ||||||||| ||||| ||||| | | |||||||| | Sbjct 85797 AAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAATCT 85856 Query 39606 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 | ||| |||| || ||| | ||||| | |||||| |||||| | | ||||| Sbjct 85857 CTAGTATC--TTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 85914 Query 39664 TATACATT 39671 |||||||| Sbjct 85915 TATACATT 85922 >seq1 Length=1295931 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| ||||||||||| ||||| | ||| || ||||| || || || Sbjct 560137 ACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGA 560196 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || || || | || |||||||| || |||||||| || | | |||||| ||||| || Sbjct 560197 TAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGG 560256 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || || |||||||| |||||||| || | ||| || Sbjct 560257 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAAC 560316 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||| | || ||||| || || ||||| ||||| | || || ||||| || || Sbjct 560317 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 560370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135796344400