Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq9 134 3e-26 >seq2 Length=1218010 Score = 176 bits (194), Expect = 1e-38 Identities = 546/825 (66%), Gaps = 25/825 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| || | || ||| | ||||||||| ||| | | ||||| Sbjct 85921 ATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAGATTGATCTAAGTCAAGAT 85862 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAA-AGTTCT 131580 | | |||||||||| |||| || ||||| | ||||| | | || | ||| Sbjct 85861 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT--CAAATACGTCT 85807 Query 131581 T-GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 | |||||||| || | |||||||||||||||||| ||||| | | | |||||| || Sbjct 85806 TAGCATTCTTTGCTGCAAGTGATGGCATTGTTATGGAAAACTTAGCAGTAAATTTCCTTA 85747 Query 131640 AAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTA 131699 |||||| | || || |||| | | || || | |||||| || ||||| | Sbjct 85746 GAGAAATACAAATACCAGAAGCCAGAATGTATTATGCTTTTCAAATGTCTATTGAACAAA 85687 Query 131700 TTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAA 131759 | ||||| || | ||||||||| | ||||| || | ||| ||| | | || Sbjct 85686 TACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGATATTAAAGAAC 85630 Query 131760 AT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGG 131816 | |||| | ||||| || | | | || || ||||||||||||||||||||| Sbjct 85629 GTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTTAAAAAGAAAGCAGAATGGG 85570 Query 131817 CTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTT 131876 | | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 85569 CAACTAAATGGATGAATTCTGAA--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGTG 85513 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || ||| Sbjct 85512 CTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACGT 85454 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCAT 131995 ||| | |||||||||||| |||| || ||| || | || | ||||||| | ||| Sbjct 85453 GGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCAT 85394 Query 131996 ACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATT 132055 |||| |||||| ||||| |||| | || |||| | | || | Sbjct 85393 GCTGACTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGTA 85334 Query 132056 AAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCT 132115 ||||| | ||| ||||| ||||| | || | | ||| || || || | ||| Sbjct 85333 CAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCT 85274 Query 132116 TGCAATTTGATTGGGATGAA-TGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 || | ||||| ||||| | |||| |||| | || |||||||| |||||||| Sbjct 85273 GTTGATCTTATTGGTATGAACTCAAGACT-TATGGCCCAATATATTGAATTTGTTGCTGA 85215 Query 132175 TCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACAT 132233 | | ||| || |||||||||||| || || || ||| || || | | | Sbjct 85214 TAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATT 85156 Query 132234 GGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 ||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 85155 GGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 85111 Score = 100 bits (110), Expect = 7e-16 Identities = 321/491 (65%), Gaps = 23/491 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || ||| |||| | | || |||||| || | Sbjct 363170 TGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGTAATTCTCTATTGAT 363229 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| |||| ||| | ||||| ||||| |||| ||||| Sbjct 363230 ATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAATGAGAGTTTTGAGCC 363289 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | | || || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 363290 ATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTT----CTTTGTAGTAA 363345 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || | ||| | | || | || | | || |||| | || | || | Sbjct 363346 ATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAGCAGA 363405 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | |||| Sbjct 363406 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAGGATATACGTG 363465 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | |||||||| |||||| |||||||||||||||||| Sbjct 363466 --AGCTTTA--TAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGATATGGCTGCA 363521 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| | |||| | | | || Sbjct 363522 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCATATG--GAAAATGCTA 363579 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 363580 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 363639 Query 113422 TGTATTATTTG 113432 | ||||||||| Sbjct 363640 TTTATTATTTG 363650 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 688095 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 688036 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||| | ||| || | ||||| || | ||| || ||||| | | ||| || || Sbjct 688035 GAAGGACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTAGTACCTATGA 687976 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 687975 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 687916 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 687915 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 687859 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 687858 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 687804 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 687803 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 687744 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 687743 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 687684 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 687683 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 687625 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 687624 ATGAAATGAATCTTCATCTTCCTCA 687600 >seq9 Length=406813 Score = 134 bits (148), Expect = 3e-26 Identities = 812/1279 (63%), Gaps = 81/1279 (6%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | || || ||||| || Sbjct 217800 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCCAAAAAATGTACT 217859 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 217860 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 217919 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 217920 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 217975 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 217976 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 218024 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 218025 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 218084 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 218085 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 218144 Query 279422 CTTAATTGGGTTGATACTTTCTGGCCAGAATTG-TTGAATCAAAAT--TTTGTAAGTGTG 279478 |||||| | || || |||||| || || | | | | || ||| Sbjct 218145 ATTAATTTAATACATTATTATTGGCCAAGTTTAATTCATTTTAGAGGATTCTTAAAACAA 218204 Query 279479 TTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTATTCATTG 279538 ||| ||| || ||| |||| || | ||||| || ||| ||| | | | || Sbjct 218205 TTTGTAACTCCTATTGTTAAAGCTAAAAAAGGATCTAATGAAATTTCATTCTTTACTTTA 218264 Query 279539 CAGAAGTTTGAACAATGGA--AAGATTCAGT--TGAGAATTCAGCCTCATTCCATAC-CA 279593 | | | ||||||||||| |||| | | | | | | || | | | | | || Sbjct 218265 TATGAATATGAACAATGGAGAAAGAATAATTCATCAAACTTAAA--TGGATGGAGATTCA 218322 Query 279594 AGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTAAAAA-A 279652 |||||| ||||||||||| ||||| | | ||| ||||||||||||| ||| | Sbjct 218323 AGTATTATAAAGGTTTAGGTACATCTACAGATCTTGAATTTAAAGAATATTTTACAAAGA 218382 Query 279653 TTAACACTTCA-------GAATTTTAATGCTAATGAGAAATCAAC----TAATGCTCTTG 279701 || | | | || |||||| | || ||| ||||| | | || ||| Sbjct 218383 TTGAAAAT-CATAGTATTGAATTTGATTGG--ATGGATGATCAAGATGATGAAGCCATTG 218439 Query 279702 ATAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGG-TTGAGAAATTATGAT 279760 ||| || |||| ||| | |||| ||| | || |||||| |||| | |||| | Sbjct 218440 ATATGGCATTCAGTAAAAAAAGAACTGAAGATAGAAAGAACTGGATTGA-ATCTTATAAA 218498 Query 279761 -AAGGA-----TGAT-ATAATTG-ATGAAGAA-CAA---ACTAATGTGACTTGTGAAGAA 279808 ||||| || | || ||| || || || ||| | ||| | | | | || Sbjct 218499 GAAGGAACTTATGTTGATTATTCTATTAATAATCAATGCAGAAATTTAAGATATTTTGAT 218558 Query 279809 TTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCAT 279868 |||||| |||||||||| | ||| || |||||| | | | |||||||| || Sbjct 218559 TTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCAAAT 218618 Query 279869 TTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCAAAA 279923 ||| | |||||||| |||||| ||| | || | || || ||| ||| |||| Sbjct 218619 TTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAAAAA 218674 Query 279924 GAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAG 279983 || || ||| | || || ||||| || ||||| ||||||||| | |||||| | Sbjct 218675 AAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTG 218733 Query 279984 GTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||||| Sbjct 218734 CTTATCATCATGGAGAATCATCATTACAAAGTACTATTGTTAATATGGCTCAAAATTTTG 218793 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | || || |||||||| | |||| ||||||||||||| | | | | Sbjct 218794 TTGGAAGTAATAATCTAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAG 218853 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA--A 280160 |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 218854 GTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAATGG 218906 Query 280161 ACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGT 280216 || || ||| || || | ||||| || ||| |||| | || | |||||||| Sbjct 218907 ACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGA 218966 Query 280217 CTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCT 280276 | |||||||| |||||||| |||||| || || |||||| | || |||||| || Sbjct 218967 CAACAAATTGAACCTTTATATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACT 219026 Query 280277 CAAGGAATTGGAACAGGTT 280295 | |||||||| ||||||| Sbjct 219027 GATGGAATTGGTACAGGTT 219045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812526291298