Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 >seq7 Length=879027 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || || || ||||| | ||||| | ||||| ||| | Sbjct 571270 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 571329 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| || ||| | || || ||| ||| ||||| || || || || || ||| Sbjct 571330 TCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGAT 571389 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | | || | | || |||||| | || |||| ||||| | || |||||| Sbjct 571390 CAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTAC 571449 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||| ||||| | || ||||| || ||| | ||||| |||| Sbjct 571450 AACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGAA 571501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | ||||| ||| | Sbjct 569777 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 569836 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 569837 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 569896 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | || |||| ||||| | || || ||||| Sbjct 569897 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 569956 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || | |||||||| || || | ||||| || Sbjct 569957 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 570003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | ||||| ||| | Sbjct 570694 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570753 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 570754 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 570813 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || |||||| | || |||| ||||| | || || ||||| Sbjct 570814 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 570873 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || | |||||||| || || | ||||| || Sbjct 570874 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 570920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25187 GTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAG 25246 || || || || || ||||| | ||||| | ||||| ||| | ||||| || ||| Sbjct 569561 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 569620 Query 25247 CAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATT 25306 | || || ||| ||| ||||| || || || || || ||||| ||| | | || Sbjct 569621 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 569680 Query 25307 TACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAA 25366 | | || |||||| | || |||| ||||| | || |||||||| ||||||||||| Sbjct 569681 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 569740 Query 25367 TCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| | || ||||| || ||| | ||||| || Sbjct 569741 TCCACTTTACACTTAGTCTTGAGACTTAGAGGTGG 569775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25187 GTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAG 25246 || || || || || ||||| | ||||| | ||||| ||| | ||||| || ||| Sbjct 570478 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 570537 Query 25247 CAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATT 25306 | || || ||| ||| ||||| || || || || || ||||| ||| | | || Sbjct 570538 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 570597 Query 25307 TACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAA 25366 | | || |||||| | || |||| ||||| | || |||||||| ||||||||||| Sbjct 570598 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 570657 Query 25367 TCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| | || ||||| || ||| | ||||| || Sbjct 570658 TCCACTTTACACTTAGTCTTGAGACTTAGAGGTGG 570692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094299853760