Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 351 1e-91 >seq2 Length=1218010 Score = 351 bits (388), Expect = 1e-91 Identities = 1176/1811 (65%), Gaps = 26/1811 (1%) Strand=Plus/Minus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878 ||| || || || ||||||||||| |||| || || |||||||| || | | || Sbjct 363647 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 363588 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || | ||| || | ||||| || |||| || || |||| | | | | Sbjct 363587 TGCAA-AGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGAC 363529 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 363528 CCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAA 363469 Query 76999 CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGATATAA 77055 | ||||| || |||| | | |||||||||| ||| || || |||| Sbjct 363468 GCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 363409 Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 | | | ||| | ||||| ||| || |||| |||| | | || | || | Sbjct 363408 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 363349 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 |||| |||| || || ||||| | ||| |||||| ||||| || ||| ||| Sbjct 363348 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 363289 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | || | | |||||||| || |||||||| | ||| || || |||||||| || | | Sbjct 363288 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 363229 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295 ||||| | ||| | | ||||| | | || ||||||| || | | |||||| | Sbjct 363228 TCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCAC 363169 Query 77296 AAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 |||| | || ||| ||| |||| | ||| |||||| ||| || ||||| ||| Sbjct 363168 AAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAG 363109 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 || || ||||||||| || || || | | |||| || || ||||| || || || | Sbjct 363108 GCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGA 363049 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 ||| | ||||| || ||| || || | ||||| | | | ||| | | | Sbjct 363048 GAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT 362989 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 | | || | | | | || || ||||| | || |||| ||||| || | | Sbjct 362988 CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATG 362929 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 | | |||||| ||| || ||||| |||| || || |||||| || ||| || | Sbjct 362928 GACGATGTCTTAAATTCGAGTTTTTACATTCTTTAAGAGAATAATATCCAACGTCAATCA 362869 Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA-- 77650 |||||| | ||| || || || || || || |||| ||| ||||||||| Sbjct 362868 ATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACG 362809 Query 77651 TCTTCC-ATCTATAACAAACATGTTCA-AAG--CTATAGATGCTAGATTACAAACTGCTA 77706 |||| || | || ||| | || ||| | ||||| || ||||||||||| || | Sbjct 362808 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 362749 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 | || | | | | |||| ||| || || || |||| ||||| | ||||| | Sbjct 362748 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 362689 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 ||| ||||| ||||| || || |||| ||| | || |||||| |||||| || ||| Sbjct 362688 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGGTGTC 362630 Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT 77885 || || ||||| || | | | || | ||| | | ||| || || |||| | | Sbjct 362629 CCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCATCGTT 362573 Query 77886 TTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 || || |||| | | | ||||| | ||||||| | ||| ||||| ||||| Sbjct 362572 TTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCA 362514 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 |||||| | |||||| |||||||| ||||||||| | | ||| || ||| | || Sbjct 362513 AACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTC 362454 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || ||| Sbjct 362453 AACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCAT 362394 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||||| ||||| |||||| ||| || | |||||| | || |||| |||||||| Sbjct 362393 CTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGG 362334 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 78181 ||| | ||| ||||| || | || || || || || ||||| ||||| || || Sbjct 362333 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 362274 Query 78182 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA 78241 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| Sbjct 362273 AGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCG 362214 Query 78242 AATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 |||||| ||| || | | ||||||||| | | | ||| | || ||||| |||| Sbjct 362213 AATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTT 362154 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 | || ||||| | | ||| || ||||||| | ||| || || || Sbjct 362153 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 362094 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | || | |||||| ||||||||| | | || |||| |||||| | ||| || Sbjct 362093 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 362034 Query 78422 AGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 | |||||| ||||| |||||| || | | | |||||||||| || | ||| || Sbjct 362033 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 361974 Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 || | |||||| || | || ||||||| | ||| || |||||||| || Sbjct 361973 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 361914 Query 78542 CTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 78600 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | | Sbjct 361913 TTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 361855 Query 78601 ATGAAAAGTCT 78611 || ||| ||| Sbjct 361854 ATTCAAAATCT 361844 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 85062 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 85121 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 85122 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 85181 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 85182 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 85240 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | | ||||| || ||||| | ||| || |||| || |||||| | | Sbjct 85241 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 85300 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 85301 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 85355 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||| ||| ||| ||||||||||| | |||| Sbjct 85356 AATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTA 85415 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 85416 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 85475 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 85476 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 85534 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||||| | || || || || |||||| || || ||||| || | Sbjct 85535 AGCAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAA 85590 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || |||| ||| | Sbjct 85591 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATAT 85650 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 85651 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 85708 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||||| || |||| || || || | | || || || Sbjct 85709 AGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 85768 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| || | ||| ||||||| | | Sbjct 85769 TTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCT 85828 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 85829 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGT 85888 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||||||||| || |||||||||||||| ||| ||||| Sbjct 85889 AACCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 85933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668643699520