Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 >seq7 Length=879027 Score = 116 bits (128), Expect = 9e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | || | ||| ||||||||||| ||||||||||| | | |||| Sbjct 571493 CTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTT 571434 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | ||||||| Sbjct 571433 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCT 571374 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| ||| || ||| |||| | | |||||| || ||||| | | Sbjct 571373 TCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 571314 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || | |||||| || || | |||||| || Sbjct 571313 GTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 571270 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| || | || | ||| | ||||||||||||||| |||||||| || | | |||| Sbjct 569997 CTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTT 569938 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | |||||| Sbjct 569937 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCC 569878 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| |||| | | |||||| || ||||| | | Sbjct 569877 TCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 569818 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || | |||||| || || | |||||| Sbjct 569817 GTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 569777 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| || | || | ||| | ||||||||||||||| |||||||| || | | |||| Sbjct 570914 CTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTT 570855 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | |||||| Sbjct 570854 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCC 570795 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| |||| | | |||||| || ||||| | | Sbjct 570794 TCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 570735 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || | |||||| || || | |||||| Sbjct 570734 GTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 570694 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | || | ||| ||||||||||| ||||||||||| | | |||| Sbjct 569769 CTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTT 569710 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | ||||||| Sbjct 569709 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCT 569650 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| ||| || ||| |||| | | |||||| || ||||| | | Sbjct 569649 TCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 569590 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || ||||| || || || | |||||| || Sbjct 569589 GTGATAGTCTTTCCTGTCAAAGTCTTAAC 569561 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | || | ||| ||||||||||| ||||||||||| | | |||| Sbjct 570686 CTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTT 570627 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| |||| ||| || || ||||| | | || || || | | ||||||| Sbjct 570626 CTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCT 570567 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| ||| || ||| |||| | | |||||| || ||||| | | Sbjct 570566 TCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 570507 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || ||||| || || || | |||||| || Sbjct 570506 GTGATAGTCTTTCCTGTCAAAGTCTTAAC 570478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820533900078