Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 >seq7 Length=879027 Score = 109 bits (120), Expect = 4e-19 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 ||| || || |||||| ||||| |||||||| || | ||| | ||| ||| ||||| | Sbjct 571513 ATTGTTCTTACATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAA 571454 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 |||||||||| | ||| | | || || | || || || |||||||||||||| | Sbjct 571453 TGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTT 571394 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTG 44275 | ||||| | || | |||||||| ||| ||||| ||| | || ||| | || || Sbjct 571393 GTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTA 571335 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || | | ||| || |||| || || |||||||| || | ||||| || || || ||| Sbjct 571334 TCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGC 571275 Query 44336 AT 44337 || Sbjct 571274 AT 571273 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| |||||||| || | ||| | ||| ||| ||||| ||||||||||| Sbjct 569779 CATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATC 569720 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || | || || || |||||||||||||| || ||||| | Sbjct 569719 AGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 569660 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | || ||| | || || || | | || Sbjct 569659 TGGGATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTT 569601 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || |||| || || |||||||| || | ||||| || Sbjct 569600 CAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAAC 569561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| |||||||| || | ||| | ||| ||| ||||| ||||||||||| Sbjct 570696 CATACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATC 570637 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| | | || || | || || || |||||||||||||| || ||||| | Sbjct 570636 AGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 570577 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||| | || ||| | || || || | | || Sbjct 570576 TGGGATTCCTTCCTTATCCTGAATCTT-TGCCTTAACATTCTCAATTGTATCTGAAGGTT 570518 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || |||| || || |||||||| || | ||||| || Sbjct 570517 CAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAAC 570478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990321027106