Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 138 3e-27 >seq7 Length=879027 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | |||||||| || ||||| | || || ||| ||||| Sbjct 571276 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 571335 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||| || ||||||||||| || || || ||| Sbjct 571336 ACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAA 571395 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | || ||||| || ||||| | ||||| ||| | Sbjct 571396 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 571455 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || | || | || |||||||| ||| Sbjct 571456 CAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGA 571494 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | |||||||| || ||||| | || || ||| ||||| || || ||| Sbjct 569561 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 569620 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || || |||||||||||| || ||||||||||| || || || ||||| | ||| Sbjct 569621 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 569680 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || |||||||| | || ||||| || ||||| | ||||| ||| | |||||||| Sbjct 569681 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 569740 Query 178113 TCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || | || | || |||||||| ||| Sbjct 569741 TCCACTTTACACTTAGTCTTGAGACTTAGA 569770 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | |||||||| || ||||| | || || ||| ||||| || || ||| Sbjct 570478 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 570537 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || || |||||||||||| || ||||||||||| || || || ||||| | ||| Sbjct 570538 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 570597 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || |||||||| | || ||||| || ||||| | ||||| ||| | |||||||| Sbjct 570598 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 570657 Query 178113 TCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || | || | || |||||||| ||| Sbjct 570658 TCCACTTTACACTTAGTCTTGAGACTTAGA 570687 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | |||||||| || ||||| | || || ||| ||||| Sbjct 570008 CAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 570067 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||| || ||||||||||| || || || ||| Sbjct 570068 ACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAA 570127 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || | ||||| || |||||||| | || ||||| || ||||| Sbjct 570128 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCT 570171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730922389492