Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 seq9 91.5 3e-13 >seq2 Length=1228863 Score = 152 bits (168), Expect = 1e-31 Identities = 313/451 (69%), Gaps = 21/451 (5%) Strand=Plus/Minus Query 230198 TGTG-TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| ||||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 88497 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 88441 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || ||| Sbjct 88440 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 88381 Query 230314 CTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 230369 |||||| | || | | | ||| ||| ||||| | || || ||||| | Sbjct 88380 CTCCATGCTGACTTTG-CTTGTTTAA-TATATAAAGCCCTTAAATTTAAATTACCAGCTC 88323 Query 230370 CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGA 230429 | ||| || |||||||||| ||||||| |||||| |||| | || ||||||| Sbjct 88322 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 88265 Query 230430 CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAAT 230488 | || |||| ||| | |||||||| |||||| | |||||||| || || || |||| Sbjct 88264 CTCTCTTCC-TGTTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAAT 88206 Query 230489 TCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA--CGAGAAAGTGTACAACTCTAAGAA 230546 | || || || | | || |||| ||||| || | | ||| | |||||| | || Sbjct 88205 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAA-TCTACAACGTTTCTAA 88148 Query 230547 CCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCG 230606 || |||| | ||||| || ||||| |||||||| || || ||||||||||||||| | Sbjct 88147 TCCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAG 88088 Query 230607 TGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || |||| ||||| | | |||| || ||| Sbjct 88087 AGTTGGTGAATATCAAATGGCTGGAGTTATG 88057 >seq9 Length=407447 Score = 91.5 bits (100), Expect = 3e-13 Identities = 305/464 (66%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||||| |||||||| | |||| | || |||||| || ||||| ||| | | Sbjct 217719 ATATCTTTTGGATTATAGTTAGGAACTGAACTACTCCAACCTGTACCAATTCCATCAGTA 217660 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 |||||||||||||| | || || || || |||||| || |||||||||| | ||| Sbjct 217659 CCATTTACCAAAATCATTGGAATTATTGGAACATAATATAAAGGTTCAATTTGTTGTCCA 217600 Query 281670 TCATCATACAAAT-ACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC-- 281726 |||||||| |||| | || | || | |||||| | || ||||| | || ||| Sbjct 217599 TCATCATATAAATAAGTTAATAAAG-GATCATCAGCCTCTGGGAAAATATATCTAGTCCA 217541 Query 281727 TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCAG 281785 || | | || || || || ||||| | ||| | | || ||||| ||||| | Sbjct 217540 TTTAGAT--AGCTTAGTAAATATATAACGAGCA-GCACTTGCATCTTTTCCACCTTCTTT 217484 Query 281786 CCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATC 281845 || ||||| ||||| || ||| || | ||||| || || || ||| Sbjct 217483 TCTACTACCAAATTGACCACATGGTTCTAACAGATTTAGATTATTACTTCCAACAAAATT 217424 Query 281846 CTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTG 281905 ||||||| || || || || | || | ||| || || || ||||| || || || Sbjct 217423 TTGAGCCATATTAACAATAGTACTTTGTAATGATGATTCTCCATGATGATAAGCACTATG 217364 Query 281906 TTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA 281965 ||| |||||||||||| || ||||| | ||| | || | | ||| | ||| || Sbjct 217363 TTCAGCAACATAACCAGCTAATTGTGC-AACTTTAAGTTCATTATTAAGCTTTTTTTTAA 217305 Query 281966 A--GCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 | |||| | | |||||||| ||| ||| || |||||||| Sbjct 217304 ATGTTGCAA-AAAGTACTTTTCTTTGTCCAGGTTTTAAACCATC 217262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823756039340