Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 149 9e-31 seq1 104 4e-17 >seq7 Length=843204 Score = 149 bits (164), Expect = 9e-31 Identities = 179/240 (75%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| ||| | || || Sbjct 551986 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTT 552045 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||| | ||||||||| ||| |||| || || ||||| ||||| ||||| || || Sbjct 552046 GAACCTTCAGATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCC 552104 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || |||||||||||||||||||||||| || |||| | Sbjct 552105 ACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTC 552164 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||||| || ||||| || || || || | | |||||||||| Sbjct 552165 TGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 552224 Score = 149 bits (164), Expect = 9e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 552223 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552282 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 552283 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 552341 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 552342 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 552401 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 552402 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTAT 552452 Score = 138 bits (152), Expect = 2e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 552451 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552510 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 552511 GATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 552569 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | ||||| || Sbjct 552570 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 552629 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||||||||| || ||||| || || || || Sbjct 552630 CATTCAAAAAGAGTCCACTTTACACTTAGTCTT 552662 >seq1 Length=1281265 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 547457 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 547398 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || || || || ||||||||| Sbjct 547397 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 547338 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 547337 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 547278 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 || || || || || ||||||||||| || || Sbjct 547277 ATCCAGAAGGAGTCCACTTTGCATTTAGTATT 547246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455830022400