Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 367 1e-96 >seq2 Length=1228863 Score = 367 bits (406), Expect = 1e-96 Identities = 1220/1870 (65%), Gaps = 56/1870 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || |||| |||||| || || ||| Sbjct 371905 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTT 371846 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 371845 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 371786 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 371785 TCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 371726 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 371725 TC--AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTATATCCT 371668 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 371667 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGCTTA 371612 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | ||| |||||||| || Sbjct 371611 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTAC 371553 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| ||| || | ||| || || || |||| |||| Sbjct 371552 AAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACT 371493 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||| | || Sbjct 371492 CTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGA 371433 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||| | | ||| || | ||| || || |||||| || || || Sbjct 371432 ATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA-AAGTCCAG 371374 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 371373 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 371314 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || || || ||| || || || || |||| || || || |||| Sbjct 371313 AATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCAT 371254 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| || |||||| ||||||| | || ||| | || ||| ||| || Sbjct 371253 AATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCA 371194 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || || || ||| || || | || |||| || || || | || | || Sbjct 371193 TA--CGAAGCATCATGAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 371137 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 || | ||| || | | ||||| | | | |||||| | || || | ||||| Sbjct 371136 GTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTAT 371077 Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATACG 37668 | | ||| || ||| | ||||||| | | | ||||| || || || || ||| Sbjct 371076 TCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-ACG 371023 Query 37669 T--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | | |||| ||| || || | |||||| | |||||||| || |||| Sbjct 371022 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 370963 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 |||| || | | || | ||| ||| || ||||| || | ||||| || ||| |||| Sbjct 370962 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 370903 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 ||||||| | || || ||| |||| || ||||||||| ||| | || || | Sbjct 370902 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCC 370843 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCT 37899 | || |||||||||| | || | ||| || |||| ||||| | ||| | Sbjct 370842 CCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGTT 370787 Query 37900 TTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCAT 37956 || || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 370786 TTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAA 370727 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 370726 ACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCA 370667 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 370666 ACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATC 370607 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || |||||| || | | ||| || | | |||| ||||||||||| Sbjct 370606 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 370547 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 370546 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 370487 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 370486 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 370427 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 ||||| | ||| | ||| |||||||||| | || || | ||||||||| || || Sbjct 370426 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCA-GTCTT 370368 Query 38317 GATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || | ||||||| ||| || ||||| ||||| | ||| || || || Sbjct 370367 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 370308 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 |||| ||||||| ||||||||||| || || || | ||||| | ||| || Sbjct 370307 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 370248 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTAT 38495 | |||||| | || |||||| ||| || | | ||||||||| | | || | || || Sbjct 370247 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 370188 Query 38496 ATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT 38555 |||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 370187 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 370128 Query 38556 TTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| ||| Sbjct 370127 TTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATA 370068 Query 38616 TGAATAATCT 38625 | | ||||| Sbjct 370067 TTCAAAATCT 370058 Score = 219 bits (242), Expect = 4e-52 Identities = 592/878 (67%), Gaps = 46/878 (5%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 88071 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 88130 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 88131 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 88190 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 88191 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 88250 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 88251 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 88305 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 88306 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 88362 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 88363 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 88422 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 88423 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 88482 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | ||| | | |||| Sbjct 88483 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGTTCAGAATTCATCC 88541 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || ||||||||||| || ||| || || || | ||| | Sbjct 88542 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 88601 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || |||| | | |||| |||| || | ||| ||| ||| Sbjct 88602 ---GCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 88658 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || |||| Sbjct 88659 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATT 88717 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | ||||| |||||||| | || Sbjct 88718 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 88776 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | | ||| ||||| | | |||| ||||||| | | ||||| Sbjct 88777 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 88833 Query 12103 ATCATCTA-AATCT----TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||| |||| |||| || ||| ||||| |||| ||| |||||| ||| | Sbjct 88834 ATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCA 88888 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | || |||||||||| ||| ||||| | || ||||| Sbjct 88889 GCTTTTTTATACATTGACCAAATATCTT--TAATTAAT 88924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524694581920