Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 315 1e-80 >seq2 Length=1228863 Score = 315 bits (348), Expect = 1e-80 Identities = 1199/1858 (65%), Gaps = 42/1858 (2%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 78775 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 371900 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 371842 Query 78776 GACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 |||| |||| || || ||||||||| | || || | | | | | || | | | Sbjct 371841 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 371782 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 371781 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 371722 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 78954 | | |||||||| |||||||| | ||| ||||||| ||| | || |||| || ||| Sbjct 371721 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTA-TATCCTCCGGA 371663 Query 78955 AGGTT---TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | | | |||| ||||| ||| || ||| ||||| | | ||| | | ||| Sbjct 371662 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 371603 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 371602 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 371543 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 ||||| | ||| || ||| ||||| || ||| |||| || | ||||| || Sbjct 371542 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 371483 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || |||||||| | ||| ||||| |||||||| || | | ||||| | ||| | || | Sbjct 371482 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 371423 Query 79192 CCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC---GGGACA 79248 || ||| || ||||||| || || |||||||| ||||| |||| || | Sbjct 371422 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 371363 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 || ||| | |||| |||||| |||||| ||||| || || || | |||||||| Sbjct 371362 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 371303 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || | ||||| || | ||||| || || || | ||| | ||||| || | Sbjct 371302 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 371243 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGGCTATCAAATGG-ATAATTTAAG 79425 || || || | ||||| | | | ||| | || || | |||| ||| ||| Sbjct 371242 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT--CGTATGGCATACG--AAG 371187 Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 371186 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 371127 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || || | |||| || || |||||| || || || | |||||| | |||||| Sbjct 371126 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 371067 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT----- 79599 || || || || || |||| || ||||||||| |||| |||| Sbjct 371066 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 371008 Query 79600 --ACAAACATGTTCAACGCGAC-AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 || ||| | | || || | ||| ||||||||||||||||| || || | | | | Sbjct 371007 CAACGAACTT-TGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTC--CTTGC 370951 Query 79657 --GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | |||| ||| ||||| ||||| | |||||| | ||| ||||| ||||||| | Sbjct 370950 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 370891 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | ||||| || | || ||||| |||||| ||| || || || || || ||||| | Sbjct 370890 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 370831 Query 79775 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTT 79833 ||| | || || ||| | | || | || || || | | | | | Sbjct 370830 GAGCCTGTAAGATTAAGAACCAAA-GTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCT 370772 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 | | | || || | | ||||| | || || || ||||||||||| | ||||| Sbjct 370771 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 370712 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||||| || || ||||| | | ||| ||| ||| | || |||| || ||| || Sbjct 370711 CTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAAC 370652 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||| |||||| || ||| ||||| | ||| ||| || ||||| | Sbjct 370651 AGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGA 370592 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 ||||| ||| || | ||| | | || |||| ||||| |||||||| || || || Sbjct 370591 TTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCA 370532 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 || | || || || ||| || ||||| || || ||||| |||| ||||||||| Sbjct 370531 ATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACG 370472 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| | Sbjct 370471 CGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTT 370412 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 | | ||||||||| | || | || | || ||||| | ||| || ||||||| Sbjct 370411 CCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCAT 370352 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATC---AATCATGTTAAGTAGAAAA 80310 ||| || ||| |||| || | ||| ||| || |||| || |||| |||| Sbjct 370351 TTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTG---AGTAAAAAA 370295 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || |||||||| | || || || | |||||| | || || | || || ||| Sbjct 370294 CAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 370235 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || |||||| || | | | || || |||| || | ||| ||||| | |||| Sbjct 370234 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 370175 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || | || ||||| | | || || |||||||| || | ||||| | ||| Sbjct 370174 ATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 370115 Query 80491 TTCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 || || ||| || ||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 370114 TT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 370058 Score = 214 bits (236), Expect = 3e-50 Identities = 587/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 49645 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 49701 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 88043 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 88102 Query 49702 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 49761 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 88103 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 88162 Query 49762 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTC 49821 |||||| || |||| || ||| |||||||| || |||||||| |||||| | Sbjct 88163 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 88222 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 49881 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 88223 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 88282 Query 49882 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 49941 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 88283 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 88333 Query 49942 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 49991 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 88334 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 88392 Query 49992 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 50051 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 88393 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 88452 Query 50052 TATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || | | |||| | |||||||| | |||||||| || || || ||| || || Sbjct 88453 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 88511 Query 50111 TCTCTCCATAA-CTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 | || || || | | | | || ||||| || ||||| || || |||||||| Sbjct 88512 TTTCAGCAAAAGATCGTTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 88570 Query 50170 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 50225 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 88571 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 88626 Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 88627 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 88684 Query 50284 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||||| | || | ||| ||| || || | || || | |||| || || | | || Sbjct 88685 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 88743 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 88744 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 88803 Query 50403 ATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 50460 |||| |||| |||| || || | | |||||| | |||||| | || ||| | Sbjct 88804 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 88861 Query 50461 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| |||||||||||| || || ||||||||||| Sbjct 88862 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 88902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268638389520