Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 248 8e-61 >seq2 Length=1228863 Score = 248 bits (274), Expect = 8e-61 Identities = 593/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||| | Sbjct 88071 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 88130 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| |||| || ||||| | | | | ||| | | | | | || | || Sbjct 88131 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 88190 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAGT 13548 |||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 88191 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAGA 88249 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | ||||||| | | | ||| | | |||| | ||||| || ||| || Sbjct 88250 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 88309 Query 13609 ATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACAC 13662 | || || | | || || || | |||| || |||| | |||||||| Sbjct 88310 -TGTTG-TACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 88363 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 88364 GCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 88423 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | || Sbjct 88424 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAAT 88482 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| ||| || | || | || ||| |||| ||| || || || Sbjct 88483 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATT---CAT 88539 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| | |||||||| | ||| ||||||| | || || ||||| | || Sbjct 88540 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 88599 Query 13902 TA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | || | | | |||||| || | ||| ||| ||||||||||||| ||| ||| Sbjct 88600 GAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 88658 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 || ||||| | ||| |||| || |||||| ||||| | ||| ||||||| || Sbjct 88659 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATTT 88718 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 ||| || | | |||| || |||| |||||||| ||||||| |||||||| || ||| Sbjct 88719 GTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 88777 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCAA 14136 || ||||| || | || ||| ||||| || || |||| | || || ||| |||| Sbjct 88778 AAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCAA 88834 Query 14137 TCGGCTA-AATC----CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || ||| ||| |||||| |||| ||||| ||| |||||| || ||| Sbjct 88835 TC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 88889 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14226 |||||||||||||| ||| || |||||| |||| Sbjct 88890 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 88924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588692317520