Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 273 3e-68 >seq2 Length=1228863 Score = 273 bits (302), Expect = 3e-68 Identities = 1158/1813 (64%), Gaps = 30/1813 (2%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| || ||||||||||||||||| |||| || |||||||||||| | || || Sbjct 371861 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 371802 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | || ||| || | || || || |||| || || |||| | | | || Sbjct 371801 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 371742 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 ||| ||||||||||| | || | |||||||| |||||||| | ||| ||||||| Sbjct 371741 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 371682 Query 71018 CTCGCTTAATATCTTCTGGAA-GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | | ||||| || |||| || | |||| ||||| ||| || |||||||| Sbjct 371681 CTCACGT-ATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 371623 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | | | || | | |||| |||||| ||| |||| | | || | || | Sbjct 371622 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 371563 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| ||||| || || ||||| | ||| |||||| ||||| || ||| | | Sbjct 371562 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 371503 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 | || | |||||| || || |||||||| | ||| ||||| || ||||| || | | Sbjct 371502 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 371443 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATT 71312 ||||||| ||| | || ||||| | | || || ||||||| || || ||||||| Sbjct 371442 TCAATAGAGAATTACGAATACCATAT--TTGGAAATCCTATCTTTAAGCGAATCCCAATC 371385 Query 71313 CCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC 71369 ||||| | || |||| ||| || || ||||| || Sbjct 371384 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 371325 Query 71370 GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTC 71429 || || | |||||| |||||||| || | |||||| || || ||||| || || || Sbjct 371324 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 371265 Query 71430 TAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCT 71489 | ||| ||||||| || ||| || || | ||||| | | | ||| || Sbjct 371264 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 371205 Query 71490 ATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 || |||| ||| ||| | || || |||||| | ||||||| |||||| || Sbjct 371204 CTCGTATGGCATA--CGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 371147 Query 71548 ATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 71607 | || | ||||| ||| || || | |||| || || |||||| || || Sbjct 371146 AATGGACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCA 371087 Query 71608 ATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 371086 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 371027 Query 71668 AA--TCTCCCATCTATTACAAAC--ACGTT-CAAGG-CAACAGATGCCAGATTACAAACG 71721 || ||| | ||| ||| || || |||| ||| ||| ||||||||||||||| Sbjct 371026 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 370967 Query 71722 GCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 || || || | | || | |||| ||| ||||| ||||| | ||||| | | Sbjct 370966 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 370909 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | ||||| ||||||| || ||||| || | || ||||| |||||| |||||| | Sbjct 370908 TAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATG 370849 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATT 71898 | || || || ||||| |||| | || || ||| | | || | || || || Sbjct 370848 GTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATC 370790 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | ||| | | || | | || || | | ||||| | || || || ||| Sbjct 370789 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 370730 Query 71959 CAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCA 72018 ||| ||| | ||||| ||||||| || ||||| | | ||| ||| ||| | Sbjct 370729 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 370670 Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 72078 | |||| || ||| || |||||||||| |||||| || ||| ||||| | ||| Sbjct 370669 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 370610 Query 72079 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 72138 ||| || ||||| |||||| ||| || | ||| | | || |||| ||||| Sbjct 370609 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 370550 Query 72139 GGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 72198 |||||||| || || || || | || || || ||| || ||||| || || ||| Sbjct 370549 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 370490 Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || |||| ||||||||| | || ||| ||||| | ||||| ||| ||||| || || Sbjct 370489 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 370430 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||| ||| | | | |||||| || | || | || | || ||||| | Sbjct 370429 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 370370 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 ||| || ||||||| ||| || ||| |||| || | ||| ||| || Sbjct 370369 TTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGA 370310 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || | |||| |||||| |||||||| | || || || | |||||| | || Sbjct 370309 ATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTG 370250 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || | || || ||||| |||||| || | | | || || |||| || | ||| Sbjct 370249 GGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCA 370190 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 ||||| | ||| || || | || ||||| | | ||| || |||||||| || Sbjct 370189 ATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACA 370130 Query 72559 ATCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | ||||| | ||||| || ||| |||||| |||| | |||||| || ||||||| | Sbjct 370129 ACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 370071 Query 72618 GTATGAAAAGTCT 72630 ||| ||| ||| Sbjct 370070 ATATTCAAAATCT 370058 Score = 219 bits (242), Expect = 6e-52 Identities = 597/895 (67%), Gaps = 47/895 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 88042 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 88101 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 88102 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 88161 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 88162 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 88221 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 88222 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 88281 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 88282 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 88335 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || || || ||| || ||||| ||||| | || Sbjct 88336 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 88394 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 88395 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 88454 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 88455 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 88513 Query 42218 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 88514 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 88570 Query 42275 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 42330 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 88571 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 88626 Query 42331 AACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 || |||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 88627 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 88684 Query 42389 TGAAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGC 42447 ||||| | || | ||| |||||| || | | |||| |||| || || | | || Sbjct 88685 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 88743 Query 42448 TAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 88744 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 88803 Query 42508 ATATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACT 42565 || | |||| ||| || | | | |||||| | |||||| | || ||| | Sbjct 88804 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 88861 Query 42566 TCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||||| || | ||||||||||||||| || ||||||||||| ||| ||||| Sbjct 88862 TCTTCAGTAAC--CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 88914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139048993680