Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 105 4e-18 seq7 93.3 3e-14 >seq1 Length=1281265 Score = 105 bits (116), Expect = 4e-18 Identities = 168/239 (70%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||||||||| | | ||| || |||||||| || ||||| || || |||||||| |||| Sbjct 547229 CACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAG 547288 Query 33201 ACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | | ||||| || ||||||||||||||| ||| || | ||| || || || Sbjct 547289 ATA----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCA 547344 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || ||||| || || || ||| |||| |||| | | ||| || ||| Sbjct 547345 GGAGGAATGCCCTCCTTATCCTGGATCTTTGCCT---TTACATTCTCAATAGTATCGGAA 547401 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| ||| |||| || || || ||||| || | |||||| || ||||||||||| || Sbjct 547402 GGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 547460 >seq7 Length=843204 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | | ||| || || || || || ||||||||||| || ||||||||||| Sbjct 552677 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 552618 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 552617 A----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 552562 Query 33259 GGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || ||||| || || |||| ||| || || | | ||| || || || Sbjct 552561 TGGGATTCCTTCCTTATCCTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAGG 552505 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| |||| ||| || || ||||| || | ||| || |||||||| ||||| Sbjct 552504 TTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 552451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/239 (69%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| || || || || || ||||||||||| || ||||||||||| Sbjct 552222 ACCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 552163 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 552162 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 552107 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || |||| ||| || || | | ||| || || | Sbjct 552106 GTGGGATTCCTTCCTTATCCTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 552050 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||| ||| |||| ||| || || ||||| || | ||| || || ||||| ||||| ||| Sbjct 552049 GTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTT 551991 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || ||| || ||||| || || ||||||||||| || ||||| ||||| Sbjct 552450 ACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 552391 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 552390 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 552335 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || || || || || |||| ||| || || | | ||| || || | Sbjct 552334 GTGGGATTCCCTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 552278 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||| |||| ||| || || ||||| || | ||| || || ||||| ||||| Sbjct 552277 GTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 552223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777530068164