Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 172 5e-38 >seq2 Length=1228863 Score = 172 bits (190), Expect = 5e-38 Identities = 575/871 (66%), Gaps = 43/871 (5%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | |||||| ||||| || ||||| ||||| |||| | |||||| | Sbjct 88071 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 88130 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT----ACACCCTAATTCTAGT 12976 |||| |||| |||||||| ||| | ||| |||| | | || || | | Sbjct 88131 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAA 88186 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTAT 13035 | ||||| ||||||||||| || || || || ||| || || ||||||| || || Sbjct 88187 AGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAAT 88245 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | | ||||| | || || | ||||||| |||| | ||||| ||||| | | Sbjct 88246 AAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGA- 88302 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGG-----ATTTGA---TAGATGCTTAA-ACAT 13146 |||| | | || || ||||| |||| |||| | || |||| | | || Sbjct 88303 TATGATT--TGTT--GTACTCTA--GGAGCTGGTAATTTAAATTTAAGGGCTTTATATAT 88356 Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 | ||| ||||| ||| || | |||||||| | ||| || || || || |||||||| Sbjct 88357 TAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGT 88416 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaa 13266 || || |||||||| || |||||||||| |||||| || ||| ||| ||| ||||| Sbjct 88417 GAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAA 88476 Query 13267 aaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACT 13326 | ||||||||||| || || | || | |||||| || | | | || | Sbjct 88477 TAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATC---GTTCAGA 88533 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTC-ATATTTTCTATT 13384 | ||||| || | ||||| | |||||| | |||||| || ||| |||| ||| Sbjct 88534 ATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGC--TTCAATATGAGAAATT 88591 Query 13385 GCGTTAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 || | || | | |||| ||| ||| | || |||||| |||| || | ||| Sbjct 88592 GCTTCAA--AGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATG 88649 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 ||| |||| ||| || | ||| || | ||||| ||| ||||| | ||| || | Sbjct 88650 AATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTT 88709 Query 13503 CTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 ||| || || | ||| | |||| || ||||||||||||| |||| || || ||| Sbjct 88710 CTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCA 88768 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC-GTTTTCTGACAACTT 13620 || |||||||| || || | | || || ||||| | | |||| | | | | |||| Sbjct 88769 CTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTT 88828 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||||||| | ||||| || ||| | ||| ||| |||||| || || | Sbjct 88829 T-CCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTC 88887 Query 13681 AGCCTTCTTATACATCATCCATATATCCTTA 13711 ||| || |||||||| ||| ||||| ||| Sbjct 88888 AGCTTTTTTATACATTGACCAAATATCTTTA 88918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982305453236