Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 116 8e-21 >seq2 Length=1228863 Score = 116 bits (128), Expect = 8e-21 Identities = 294/435 (68%), Gaps = 19/435 (4%) Strand=Plus/Minus Query 243314 TGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 243372 ||||| |||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 88497 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 88441 Query 243373 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGC 243429 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || || Sbjct 88440 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 88381 Query 243430 CTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 243485 || || | || | | | || ||| ||||| | || || ||||| | Sbjct 88380 CTCCATGCTGACTTTGCTTGTTTAATATAT--AAAGCCCTTAAATTTAAATTACCAGCTC 88323 Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 | | | || |||||||||| ||||||| |||||| |||| | || |||| || Sbjct 88322 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 88265 Query 243546 CGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAAT 243604 | || |||| || | |||||||| |||||||| ||| |||| || || || |||| Sbjct 88264 CTCTCTTCC-TGTTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAAT 88206 Query 243605 TCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAAC 243663 | || || || | | | | || ||||| ||| ||| | |||||| || Sbjct 88205 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAATCTACAACGTTTCTAAT 88147 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || |||| | ||||| || ||||| |||||||| ||||||||||||||||||||| | Sbjct 88146 CCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGA 88087 Query 243724 GTCAGTGATTATCAA 243738 || |||| |||||| Sbjct 88086 GTTGGTGAATATCAA 88072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879745648300