Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7 143 2e-29 seq1 122 6e-23 >seq7 Length=843204 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 552221 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 552162 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 552161 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 552102 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 552101 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 552043 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 552042 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 551990 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || || |||||||| | ||||| |||||||| |||||||| || | Sbjct 552449 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 552390 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 552389 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 552330 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 552329 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 552271 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || |||||||| |||||| Sbjct 552270 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 552222 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 552677 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 552618 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 552617 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 552558 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 552557 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 552499 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || || ||||| |||||| Sbjct 552498 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 552450 >seq1 Length=1281265 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || |||||||| | || || || || || || ||||| || Sbjct 547231 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 547290 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || ||||| | |||| ||||||||| || ||| Sbjct 547291 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 547350 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| ||| ||| | || ||||||||| | ||| || Sbjct 547351 ATGCCCTCCTTATCCTGGATCTTTGCCTTT-ACATTCTCAATAGTATCGGAAGGTTCAAC 547409 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| | |||||| |||||||||||||| || Sbjct 547410 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 547460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391921597130