Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq7 116 9e-21 >seq1 Length=1281265 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | || | ||| |||||||| |||| |||||||||| | ||| Sbjct 547236 TCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGT 547295 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| |||||||| || ||||| |||||||| || || ||| ||| || Sbjct 547296 TCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCC 547355 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| |||||| ||| || || | || || | | ||| || ||||| Sbjct 547356 CTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAA 547415 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||| ||||||||||| Sbjct 547416 TGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTG 547454 >seq7 Length=843204 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| ||| | ||| | ||| ||||| ||||| | |||||| |||| | ||| Sbjct 552216 TCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 552157 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 552156 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 552097 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||||||| ||| || || | || |||| | ||| || ||||| Sbjct 552096 TTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 552037 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || |||||||| || Sbjct 552036 AGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTG 551998 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| ||| | ||| | ||| ||||| ||||| | |||||| |||| | ||| Sbjct 552672 TCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGT 552613 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 552612 TCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCC 552553 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||||||| ||| || || | || |||| | ||| || ||||| Sbjct 552552 TTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAA 552493 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || ||||| || Sbjct 552492 AGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTG 552454 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| ||||| | ||||||||||| | ||| || ||||| || | || ||||| Sbjct 552420 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 552361 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || ||||| | ||| || || || || ||||| || || ||||||||| ||| Sbjct 552360 TGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 552301 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || || | || |||| | ||| || ||||| ||||| ||||| || || | ||| Sbjct 552300 AACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 552241 Query 199612 TTTCACAAAAATTTG 199626 || |||||||| || Sbjct 552240 CTTGACAAAAATCTG 552226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921328111206