Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 168 8e-37 >seq2 Length=1228863 Score = 168 bits (186), Expect = 8e-37 Identities = 1115/1757 (63%), Gaps = 62/1757 (4%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||||| ||||| |||| ||| |||||||| | ||||| ||| | | ||||| Sbjct 370132 TGGAAAGACCACA--ACATCTTCTGATGCGGGTTTCTTGTGGTATTCATTGTGGTGATAT 370189 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACAC 111720 ||| ||| | || ||||| || | | || | ||| || || | ||||||| Sbjct 370190 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTTACTC-ATGCAACAC 370248 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATT--GC 111778 | || ||||| || | || || || |||| |||||||| |||||| ||| | | Sbjct 370249 CCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTTT-TTACTCAGG 370307 Query 111779 AAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || ||||||| || || || | | ||| || ||| |||| || | || Sbjct 370308 ATTCCAGAAG-ATTCAATAAACGGTATCTTTGACACACTAACTAAATGCGCAAACATTAG 370366 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 ||| || ||||| | ||| || | | || | |||| ||| || | || Sbjct 370367 TAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGG-AACTGGTTCATATA 370425 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||| |||||||| ||| |||| | ||||| ||||| ||||| | ||| | || Sbjct 370426 TTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACA 370485 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | ||| | | |||| ||| | || || || | || ||| | ||| | | Sbjct 370486 CTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGG 370545 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 | |||||||||| ||| | | ||||| |||| | | || || || | || | Sbjct 370546 AACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAGAATCATGGAAAGGAAG 370605 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 || | | || ||||||||||| | || || ||| |||| ||||| |||||| | |||| Sbjct 370606 AGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAG 370665 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGAT 112193 ||||| || | ||||| |||| | || ||||| || ||| || | ||| Sbjct 370666 TTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGAT 370724 Query 112194 GCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | ||| || || ||| |||| || || | |||| ||| || || | || | | Sbjct 370725 GTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAA 370782 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACT 112310 ||| || ||| || || | | || ||| | || |||||| ||||| Sbjct 370783 GGAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACG 370841 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTT 112369 || ||||||| ||| ||| ||||| | ||| || | || ||||| || || ||||| Sbjct 370842 GGGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTT 370900 Query 112370 GGGTGTGATCAAGAGTTCC----AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || || | | ||| | ||| | || ||||||||| | |||| || ||| | Sbjct 370901 GG----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCAAGG 370956 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | || || || ||||| || || || || | || || |||| || ||| | | | Sbjct 370957 ACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCGTTGATAAAAATA 371016 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||||| ||||||| ||| || | | ||||||||||| | || | || | | Sbjct 371017 ACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGA 371076 Query 112546 ACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | | | | ||||| | || ||| || | | | ||| || | || || ||| | | Sbjct 371077 ATAAATTGATTGACGTTGGATATTATT--CTCTTAAAGAATG-TACAAACTCGAATTTAA 371133 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TGTATTCATTCTTTGTCGC 112661 |||| |||||| | || | || | ||||| ||||| || ||| ||||| | ||| Sbjct 371134 GACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTCATGATGCTTCGT 371192 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 ||| || || || | ||| ||| | | ||| | || ||||| || ||| Sbjct 371193 ATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTTTGAAGTTATCTAT 371252 Query 112722 CACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 112781 | || ||||| || || || | ||| | ||||| |||||||||| ||||| | | Sbjct 371253 TATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCCATACGAAACATAT 371312 Query 112782 GAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACCA 112839 ||||| || || | | |||| || |||||||||||||||| | || | |||| Sbjct 371313 TCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACCA 371369 Query 112840 AGCT----TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 || | | || ||||| | || || || | || | | ||| ||||| Sbjct 371370 GACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGT 371429 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || ||| ||||| | |||||||||||||| ||||| ||||||| || ||||| ||| Sbjct 371430 AATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAAT 371489 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || | ||||| || | ||| ||||||| |||| | || || | || ||||| Sbjct 371490 GAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTTC 371549 Query 113016 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG--TCCAAGG 113073 | | || || ||| | | |||| | |||| |||| | ||| | ||| Sbjct 371550 TTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGG 371609 Query 113074 -ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCA 113132 || | || || | || | || || || ||||||||||| | ||||| Sbjct 371610 CTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATACTTACAATTCCG 371666 Query 113133 GATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGAC 113192 || || || || | || || || |||||||||||| ||| || ||||| Sbjct 371667 GAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGAT 371726 Query 113193 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA--ATCTATTCATGG 113250 ||||| |||||| | |||| | || |||| ||| | ||| ||| || |||| Sbjct 371727 ATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCAT--ATGG 371784 Query 113251 AAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTC 113309 ||| | | ||| || | ||| | || |||||||| | || ||||||| || ||||| Sbjct 371785 AAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTA 371843 Query 113310 AAAACGGGGATGTATTA 113326 ||||| || || ||||| Sbjct 371844 AAAACAGGCATTTATTA 371860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742260332960