Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 280 2e-70 >seq2 Length=1228863 Score = 280 bits (310), Expect = 2e-70 Identities = 715/1075 (67%), Gaps = 26/1075 (2%) Strand=Plus/Minus Query 47825 AATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAG 47878 || |||| |||| |||| |||||||||| ||||||||| || ||| || | ||| Sbjct 371051 AACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAG 370992 Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATT 47936 | ||||| || |||||||| || || || || | ||| |||| |||| ||| ||| Sbjct 370991 GCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TAGTGTATTCTATGATT 370934 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTT 47995 || | |||| |||| | ||||| |||||||||| || ||| || | || Sbjct 370933 TCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 370874 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || || || || ||| ||||| ||||| || || || || |||| | | ||| | Sbjct 370873 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 370815 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTT---CGTATTT 48112 ||||| || || || || | | | | | | |||| | || | Sbjct 370814 GAACCAAAGTTTCTGCGCTTTCATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTC 370758 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 ||||| ||||| ||| ||||| || | |||| | || || ||||||| || Sbjct 370757 TTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGG 370698 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 ||||| | | |||||| | ||| || | ||||| ||| || | ||| || | ||| Sbjct 370697 GCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCA 370638 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 ||| || ||| | ||| | | ||| | ||||| || ||| |||| | ||| ||| Sbjct 370637 AAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTC 370578 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 || ||| || | | |||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 370577 AATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACG 370518 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || || |||||||| ||||| || ||||| | |||||||| | | ||| || | Sbjct 370517 CTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAAT 370458 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||||| ||| | ||||| ||||| |||||| ||| | |||| |||||||| Sbjct 370457 TAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACT 370398 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTA--GATATTAGAGCACACCGTTTAAGGGTA 48530 | || | || | |||||||| | ||| || || | ||| ||| || || Sbjct 370397 TACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTG 370340 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 ||| | || || | ||| ||| ||| || | | || ||||||| |||||||| Sbjct 370339 TCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGA 370280 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 || | || ||||||||||| | ||| || | ||||||| |||| |||| | ||| Sbjct 370279 GGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGAT 370220 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 ||||| | ||||||||||| ||| || ||||| | ||| ||||| ||| || Sbjct 370219 AACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACAAGAAACC 370160 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | | || ||| |||||||| |||| |||||| | ||||| | |||||| ||| Sbjct 370159 CGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGAT 370100 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGA 48829 |||| | ||||| || ||||||| | ||| ||| || || | | ||| |||| Sbjct 370099 CTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATC-TTTTGAAAAATCAATTTT 370041 Query 48830 TGAATTTATTCTTTCCTTATGTTTATATACTACATCCAT-TACATTTTTTGATAT 48883 |||||| |||||||| ||| ||| || || | ||| |||| |||||| || Sbjct 370040 TGAATTAATTCTTTCTCTAT-TTTCCATGATAAAATCATAAACATGTTTTGAAAT 369987 Score = 228 bits (252), Expect = 9e-55 Identities = 584/871 (67%), Gaps = 51/871 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 88071 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 88130 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 88131 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 88189 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| | ||| | | ||||| || || | Sbjct 88190 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGA 88249 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 88250 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 88309 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| | | | | || | ||| |||| | || ||||| |||| Sbjct 88310 TGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAA 88367 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||| || || || || | ||| || | ||||||||||||||| | ||||||| Sbjct 88368 AGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 88427 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | ||||| | |||||| | ||| || || | | |||| | | |||||||| | || ||| Sbjct 88428 TAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCT 88486 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCA 19145 || || || || ||| | |||||| || || ||| || | || ||||| Sbjct 88487 TCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCCA 88542 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||| |||||| || || |||||||| ||| | || ||| | |||| | Sbjct 88543 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCT---------TCAATATGAG-AAATTG 88592 Query 19206 ATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGTA 19256 | || | | ||| || ||||||| || || |||||||||||| | || | Sbjct 88593 CTTCAAA-GAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAA 88651 Query 19257 CA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| |||||| Sbjct 88652 TAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCT 88711 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 88712 GGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTT 88771 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGTA 19431 || ||||| |||||||| || | ||| ||||||||| ||||| ||| |||| Sbjct 88772 GCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCT----TTAAGACT 88827 Query 19432 TTCC-AATCATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| |||| || |||||| ||||| ||||| |||| ||| |||||| || | Sbjct 88828 TTCCCAATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATG 88883 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || |||||||||||||| ||| ||||| Sbjct 88884 CTTCAGCTTTTTTATACATTGACCAAATATC 88914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108673525520