Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 136 2e-27 >seq2 Length=1228863 Score = 136 bits (150), Expect = 2e-27 Identities = 315/475 (66%), Gaps = 0/475 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 || ||| || | || | |||||| || | ||||||| | ||||| || | ||| || Sbjct 370703 ATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGG 370644 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||| ||| | ||| | |||||| ||||| ||||| |||||||| | Sbjct 370643 AACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCT 370584 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || | || || | || ||| |||||||||||| ||||| || |||| ||| Sbjct 370583 AATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACC 370524 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | || |||||||||||||| | || || ||||| ||||| |||| || ||| Sbjct 370523 TTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCAT 370464 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| ||||||| | || || ||||| | |||| | || || || |||||| Sbjct 370463 CGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAAT 370404 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 || | | || | ||||| || || ||| ||| || | | | Sbjct 370403 ATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAG 370344 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 ||| || || || || ||||| ||| || || | | |||||||||||| || | Sbjct 370343 TGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACAT 370284 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 ||| | | | || ||||||||||| | ||| ||||| ||||||||| ||||| Sbjct 370283 TTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATAT 370229 Score = 102 bits (112), Expect = 4e-17 Identities = 309/468 (66%), Gaps = 26/468 (6%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 || || | |||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 371869 GTCCTCAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 371810 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || ||||||| ||| || ||| | | | ||||| ||||| | ||| |||||| Sbjct 371809 GATAACTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACA 371750 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCGT--TTTCATCGATATATCGTAAGCTG 24872 | | ||||||||||| | ||||| | || ||| | ||| | | || | | Sbjct 371749 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATA--CAG 371692 Query 24873 TTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA--CTGATCCATT 24930 | || || ||| ||| || ||||| | |||||||||| ||| ||||| Sbjct 371691 TCTTATAAAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTG--CCATT 371634 Query 24931 TTCTCTCAATAG-ATTC-----AATCTCAT-ATTCGGTGTCCAAAGATTAATTTTTTCAA 24983 | | ||||| |||| || | || || | | || ||| | | | | Sbjct 371633 ATTTG-CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGT------A 371581 Query 24984 GATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTG 25043 ||| | | |||||| ||||| | || || || ||||| | || || | || Sbjct 371580 AATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGA--TG 371523 Query 25044 ATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGA 25101 |||| ||| || |||||||| ||||||| ||||| || ||||| ||||| ||||| || Sbjct 371522 ATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGA 371463 Query 25102 TGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 ||||||||||||| | ||| ||||| ||||| | | ||||||||| Sbjct 371462 TGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATACCATATTT 371415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039944489350