Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 343 2e-89 >seq2 Length=1228863 Score = 343 bits (380), Expect = 2e-89 Identities = 1175/1818 (65%), Gaps = 34/1818 (2%) Strand=Plus/Minus Query 68412 ATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTT 68471 ||| || || || ||||| |||||| |||| || || ||||||||| || || || Sbjct 371861 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 371802 Query 68472 GGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCC 68531 | | | | | || | ||||| || |||| ||||| |||| | | | || Sbjct 371801 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 371742 Query 68532 TCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAAT 68591 |||||||| ||||| | || | ||||||| |||||||| | ||||||| ||| Sbjct 371741 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 371682 Query 68592 CTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAAT 68648 || ||||| || |||| | |||||||||| ||| || | ||||| Sbjct 371681 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAAT 371622 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | | ||| | | ||||| ||| || ||| |||| | | || | ||||| Sbjct 371621 ATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGG 371562 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 ||| |||| || || ||||||| || |||||| ||||| || ||| |||| Sbjct 371561 ATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGG 371502 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 || | | ||||| || || | |||||| | ||| ||||| |||||||| || | | Sbjct 371501 CTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATAT 371442 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | || ||||| | | || ||||||| || | |||||| || Sbjct 371441 CAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA 371382 Query 68889 AAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATA 68945 ||| |||| |||| ||| ||| | ||| |||||| ||| || ||||| ||| Sbjct 371381 AAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGG 371322 Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 || || ||||||||| || || || | | ||| || || ||||| || || || | Sbjct 371321 CGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAG 371262 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGACTA 69063 || | ||||| || ||| || || | ||||| | | | ||| | ||||| Sbjct 371261 AGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT- 371203 Query 69064 TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATA 69123 || |||| | | | | || || ||||| | || |||| ||||| || | Sbjct 371202 -CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAAT 371144 Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 || | |||||| ||| || || | |||| || || |||||| || || || Sbjct 371143 GGACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATC 371084 Query 69184 ATTTTATTAAGATT--TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 69241 | |||||| | ||| ||| | | || || || || |||| || |||||||| Sbjct 371083 AATTTATTCAAATTCCTCGTAATC--ACCTTCGTAACTTCTTTTAACTTATCAAAATCAA 371026 Query 69242 ATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACT 69294 | |||| ||| ||| ||| | || | | ||| || ||||||||||| Sbjct 371025 A-CGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 370967 Query 69295 GCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATA 69354 || || || | | | |||| ||| || ||||| |||| ||||| | ||| Sbjct 370966 GCAACTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 370907 Query 69355 GTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGA 69414 || |||| ||||| ||| ||||| || | || || || || ||| |||||| || Sbjct 370906 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGT 370847 Query 69415 GTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACG 69474 || || || ||||| |||| | | || | ||||| | || || || || Sbjct 370846 GTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CG 370789 Query 69475 GT---CTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCC 69531 | ||| | || | | ||| ||||| | | ||||||| | || ||||| ||| Sbjct 370788 TTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 370730 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 |||||||| | |||||| ||||||| ||| ||||| | | ||| | | ||| | | Sbjct 370729 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 370670 Query 69592 TTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTA 69651 | ||||| || ||| || ||||| |||| |||||| || ||||||||| | ||| Sbjct 370669 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 370610 Query 69652 TTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCAT 69711 | ||||| ||||| ||| || ||| || | |||||| | || |||| |||||| Sbjct 370609 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 370550 Query 69712 GGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTG 69771 ||||| | ||| || || ||| | || || || ||| || ||||| || || || Sbjct 370549 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 370490 Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||||| |||||| || | |||||||||||| | ||||||||| | ||||||||||| Sbjct 370489 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 370430 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||| || || | | ||||||||| | | | || | || ||||| | Sbjct 370429 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 370370 Query 69892 TTA--GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTA 69949 ||| | || | ||| ||| | ||||||| | ||||| | ||| ||| ||| Sbjct 370369 TTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 370312 Query 69950 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009 || | || | |||||| ||||||||| | | || || | |||||| | || Sbjct 370311 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTG 370252 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 | || | ||| ||||| || |||||| || | || | |||||||||| || | || Sbjct 370251 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 370192 Query 70070 CTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 | ||||| |||| |||||| || | || ||||||| | ||| || |||| ||| Sbjct 370191 CAATATCACCAC-AATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCC 370133 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 || ||| || | ||||| | || || ||| |||| |||||||| || ||||||| Sbjct 370132 ACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 370073 Query 70189 TTGTATGAAAAGTCTCTT 70206 | ||| ||| ||| || Sbjct 370072 TCATATTCAAAATCTTTT 370055 Score = 241 bits (266), Expect = 2e-58 Identities = 588/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 88043 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 88102 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 88103 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 88162 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 88163 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 88221 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | | ||||| || || || | ||| || |||| || ||||| | | | Sbjct 88222 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 88281 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 88282 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 88338 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || |||||| ||| || || ||||| | |||||| Sbjct 88339 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 88398 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 88399 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 88458 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 88459 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 88517 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| || ||| Sbjct 88518 CAAAAGATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTT 88577 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | |||| ||| |||| ||| Sbjct 88578 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTAT 88637 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 88638 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 88697 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 88698 ACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 88756 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || || | ||| ||||||| | ||||| | Sbjct 88757 ACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGG 88816 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | ||||||| |||| Sbjct 88817 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAA 88876 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 || || || || || ||||| ||||| ||| ||||| Sbjct 88877 AATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 88914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908645445520