Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq2 91.5 2e-13 >seq7 Length=843204 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || |||||||| ||| | || ||||| | Sbjct 552223 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552282 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| || ||||| || ||||||||||| || || || || Sbjct 552283 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 552342 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || || ||| | ||||||| | | || || | ||||| || Sbjct 552343 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 552402 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || ||| | ||| |||| ||| | || | ||||| Sbjct 552403 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGG 552449 >seq2 Length=1228863 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 |||| || ||| || ||||| || || || || || ||||| || || | |||||||| Sbjct 371869 GTCCTCAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGAT 371810 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | ||| |||| | | || ||||| |||||||| ||| || || ||||| | Sbjct 371809 GATAACTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACA 371750 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 | | || | |||||| ||||| ||||| | || |||||| ||||||||||| || Sbjct 371749 TATGGACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTC 371690 Query 80218 CGATACACCTTACGAAGCTCCTCTGGAA-TGT--CCAGATTTTGCACACTGCCA 80268 ||| | || ||| | ||||| |||| ||| | |||||| | ||||||| Sbjct 371689 TTATAAAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCA 371636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310271680160