Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7 145 7e-30 seq1 118 9e-22 >seq7 Length=843204 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 551995 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552054 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 552055 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 552114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 552115 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 552174 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 552175 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 552207 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 552223 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552282 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 552283 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 552342 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || || |||||| Sbjct 552343 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 552402 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || |||||||| || ||| Sbjct 552403 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 552435 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 552451 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 552510 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 552511 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 552570 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 552571 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 552630 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 552631 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 552663 >seq1 Length=1281265 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || || | ||||| ||||| ||| Sbjct 547457 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 547398 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| || || || || || ||||| || || |||||| Sbjct 547397 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 547338 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || || | || || ||||| Sbjct 547337 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 547278 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || |||||||| || || ||||| || ||| Sbjct 547277 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTG 547245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918302143360