Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 >seq2 Length=1228863 Score = 178 bits (196), Expect = 1e-39 Identities = 568/862 (66%), Gaps = 33/862 (4%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 88071 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 88130 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 88131 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 88190 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-AT 4436 ||| ||||| |||||||| ||||| ||| ||| ||| |||| || ||||| | || Sbjct 88191 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 88250 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 88251 CA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 88309 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACGC 4552 | || || | || || |||| ||||| |||| | | | | |||||| || Sbjct 88310 TGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAGC 88365 Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 ||| ||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| || Sbjct 88366 AAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGG 88425 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | || | |||||||||||||| || || ||| |||||||| | || || Sbjct 88426 CATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCC 88485 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 ||| || || || | | | |||| | || || | | | | || | |||| Sbjct 88486 TTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGTTCAGAATTCA-TCCA 88542 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAATA 4791 ||| |||||| | ||||| || ||||| ||| || | | || || | ||| | Sbjct 88543 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAA-ATTGCTTCAAAGA 88601 Query 4792 --ATTT-ACTTTTTTCAA-ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 |||| || || || || || || |||||| | || || |||| ||| || Sbjct 88602 GCATTTGACGTTCTTTAATATCAGT----AATATATCTATCAATAAGTAATGAATAAGTT 88657 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||| ||||||| || | Sbjct 88658 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 88717 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || || || ||||| || ||| Sbjct 88718 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 88777 Query 4968 AAAAACGCCAAAAC--ATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCC 5022 || || || || || || |||| || || | ||||| | |||| ||| || Sbjct 88778 AAGAATGCTAAGACGTATTTGATAAAATGTCTT-----TCAGGGTCTTTAAGACTTTCCC 88832 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 | | ||||| | ||| ||||| |||||| | |||||| || ||||| |||| Sbjct 88833 AATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTT 88892 Query 5083 TTTTGTACATAGACCAAATATC 5104 |||| ||||| ||||||||||| Sbjct 88893 TTTTATACATTGACCAAATATC 88914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049506315994