Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305395.1_202015-10- 01] 18 sequences; 9,179,731 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 345 6e-90 >seq2 Length=1228863 Score = 345 bits (382), Expect = 6e-90 Identities = 1175/1811 (65%), Gaps = 26/1811 (1%) Strand=Plus/Minus Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCAGTT 76878 ||| || || || ||||||||||| |||| || || |||||||| || | | || Sbjct 371861 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 371802 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 || || | ||| || | ||||| || |||| || || |||| | | | | Sbjct 371801 TGCAA-AGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGAC 371743 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 | ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 371742 CCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAA 371683 Query 76999 CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGATATAA 77055 | ||||| || |||| | | |||||||||| ||| || || |||| Sbjct 371682 GCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 371623 Query 77056 TTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAG 77115 | | | ||| | ||||| ||| || |||| |||| | | || | || | Sbjct 371622 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 371563 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 |||| |||| || || ||||| | ||| |||||| ||||| || ||| ||| Sbjct 371562 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 371503 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | || | | |||||||| || |||||||| | ||| || || |||||||| || | | Sbjct 371502 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 371443 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 77295 ||||| | ||| | | ||||| | | || ||||||| || | | |||||| | Sbjct 371442 TCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCAC 371383 Query 77296 AAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCAT 77352 |||| | || ||| ||| |||| | ||| |||||| ||| || ||||| ||| Sbjct 371382 AAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAG 371323 Query 77353 ATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 || || ||||||||| || || || | | |||| || || ||||| || || || | Sbjct 371322 GCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGA 371263 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 ||| | ||||| || ||| || || | ||||| | | | ||| | | | Sbjct 371262 GAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT 371203 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 | | || | | | | || || ||||| | || |||| ||||| || | | Sbjct 371202 CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATG 371143 Query 77533 GTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAA 77592 | | |||||| ||| || || || |||| || || |||||| || ||| || | Sbjct 371142 GACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCA 371083 Query 77593 TTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA-- 77650 |||||| | ||| || || || || || || |||| ||| ||||||||| Sbjct 371082 ATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACG 371023 Query 77651 TCTTCC-ATCTATAACAAACATGTTCA-AAG--CTATAGATGCTAGATTACAAACTGCTA 77706 |||| || | || ||| | || ||| | ||||| || ||||||||||| || | Sbjct 371022 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 370963 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 | || | | | | |||| ||| || || || |||| ||||| | ||||| | Sbjct 370962 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 370903 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 ||| ||||| ||||| || || |||| ||| | || |||||| |||||| || ||| Sbjct 370902 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGGTGTC 370844 Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT 77885 || || ||||| || | | | || | ||| | | ||| || || |||| | | Sbjct 370843 CCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCATCGTT 370787 Query 77886 TTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 || || |||| | | | ||||| | ||||||| | ||| ||||| ||||| Sbjct 370786 TTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCA 370728 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 |||||| | |||||| |||||||| ||||||||| | | ||| || ||| | || Sbjct 370727 AACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTC 370668 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || ||| Sbjct 370667 AACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCAT 370608 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||||| ||||| |||||| ||| || | |||||| | || |||| |||||||| Sbjct 370607 CTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGG 370548 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 78181 ||| | ||| ||||| || | || || || || || ||||| ||||| || || Sbjct 370547 TTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGC 370488 Query 78182 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA 78241 |||| ||||||||| | || ||| ||||| | || |||||| | ||||||||||| Sbjct 370487 AGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCG 370428 Query 78242 AATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 |||||| ||| || | | ||||||||| | | | ||| | || ||||| |||| Sbjct 370427 AATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTT 370368 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 | || ||||| | | ||| || ||||||| | ||| || || || Sbjct 370367 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 370308 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | || | |||||| ||||||||| | | || |||| |||||| | ||| || Sbjct 370307 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 370248 Query 78422 AGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT 78481 | |||||| ||||| |||||| || | | | |||||||||| || | ||| || Sbjct 370247 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 370188 Query 78482 GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 || | |||||| || | || ||||||| | ||| || |||||||| || Sbjct 370187 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 370128 Query 78542 CTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 78600 || || | ||||| || ||| || ||| |||| | |||||| || ||||||| | | Sbjct 370127 TTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCAT 370069 Query 78601 ATGAAAAGTCT 78611 || ||| ||| Sbjct 370068 ATTCAAAATCT 370058 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 88043 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 88102 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 88103 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 88162 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 88163 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 88221 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | | ||||| || ||||| | ||| || |||| || |||||| | | Sbjct 88222 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 88281 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 88282 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 88336 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||| ||| ||| ||||||||||| | |||| Sbjct 88337 AATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTA 88396 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 88397 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 88456 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 88457 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 88515 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||||| | || || || || |||||| || || ||||| || | Sbjct 88516 AGCAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAA 88571 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || |||| ||| | Sbjct 88572 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATAT 88631 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 88632 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 88689 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||||| || |||| || || || | | || || || Sbjct 88690 AGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 88749 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| || | ||| ||||||| | | Sbjct 88750 TTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCT 88809 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 88810 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGT 88869 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||||||||| || |||||||||||||| ||| ||||| Sbjct 88870 AACCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 88914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668643699520