Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 seq9 91.5 3e-13 >seq2 Length=1244090 Score = 152 bits (168), Expect = 1e-31 Identities = 313/451 (69%), Gaps = 21/451 (5%) Strand=Plus/Minus Query 230198 TGTG-TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 |||| ||||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 83431 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 83375 Query 230257 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGT 230313 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || ||| Sbjct 83374 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 83315 Query 230314 CTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 230369 |||||| | || | | | ||| ||| ||||| | || || ||||| | Sbjct 83314 CTCCATGCTGACTTTG-CTTGTTTAA-TATATAAAGCCCTTAAATTTAAATTACCAGCTC 83257 Query 230370 CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGA 230429 | ||| || |||||||||| ||||||| |||||| |||| | || ||||||| Sbjct 83256 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 83199 Query 230430 CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAAT 230488 | || |||| ||| | |||||||| |||||| | |||||||| || || || |||| Sbjct 83198 CTCTCTTCC-TGTTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAAT 83140 Query 230489 TCGTAGCCGACCGCATTTTTGTTGCACTTGGTTA--CGAGAAAGTGTACAACTCTAAGAA 230546 | || || || | | || |||| ||||| || | | ||| | |||||| | || Sbjct 83139 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAA-TCTACAACGTTTCTAA 83082 Query 230547 CCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCG 230606 || |||| | ||||| || ||||| |||||||| || || ||||||||||||||| | Sbjct 83081 TCCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAG 83022 Query 230607 TGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || |||| ||||| | | |||| || ||| Sbjct 83021 AGTTGGTGAATATCAAATGGCTGGAGTTATG 82991 >seq9 Length=425574 Score = 91.5 bits (100), Expect = 3e-13 Identities = 305/464 (66%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||||| |||||||| | |||| | || |||||| || ||||| ||| | | Sbjct 216422 ATATCTTTTGGATTATAGTTAGGAACTGAACTACTCCAACCTGTACCAATTCCATCAGTA 216363 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 |||||||||||||| | || || || || |||||| || |||||||||| | ||| Sbjct 216362 CCATTTACCAAAATCATTGGAATTATTGGAACATAATATAAAGGTTCAATTTGTTGTCCA 216303 Query 281670 TCATCATACAAAT-ACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC-- 281726 |||||||| |||| | || | || | |||||| | || ||||| | || ||| Sbjct 216302 TCATCATATAAATAAGTTAATAAAG-GATCATCAGCCTCTGGGAAAATATATCTAGTCCA 216244 Query 281727 TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCAG 281785 || | | || || || || ||||| | ||| | | || ||||| ||||| | Sbjct 216243 TTTAGAT--AGCTTAGTAAATATATAACGAGCA-GCACTTGCATCTTTTCCACCTTCTTT 216187 Query 281786 CCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATC 281845 || ||||| ||||| || ||| || | ||||| || || || ||| Sbjct 216186 TCTACTACCAAATTGACCACATGGTTCTAACAGATTTAGATTATTACTTCCAACAAAATT 216127 Query 281846 CTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTG 281905 ||||||| || || || || | || | ||| || || || ||||| || || || Sbjct 216126 TTGAGCCATATTAACAATAGTACTTTGTAATGATGATTCTCCATGATGATAAGCACTATG 216067 Query 281906 TTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA 281965 ||| |||||||||||| || ||||| | ||| | || | | ||| | ||| || Sbjct 216066 TTCAGCAACATAACCAGCTAATTGTGC-AACTTTAAGTTCATTATTAAGCTTTTTTTTAA 216008 Query 281966 A--GCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATC 282007 | |||| | | |||||||| ||| ||| || |||||||| Sbjct 216007 ATGTTGCAA-AAAGTACTTTTCTTTGTCCAGGTTTTAAACCATC 215965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823539185420