Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 284 1e-71 >seq2 Length=1244090 Score = 284 bits (314), Expect = 1e-71 Identities = 1188/1857 (64%), Gaps = 40/1857 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 52865 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 373594 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 373536 Query 52866 GACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTA 52925 |||| |||| || |||||||||||| || || || | | | | | || | | | Sbjct 373535 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 373476 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 373475 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 373416 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 53044 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 373415 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 373357 Query 53045 A-GGT--TTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | || | |||| |||||| ||| || | | ||||| | | ||| | | |||| Sbjct 373356 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 373297 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 373296 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 373237 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 373236 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 373177 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 373176 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 373117 Query 53282 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 53338 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 373116 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 373057 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 53398 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 373056 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 372997 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 372996 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 372937 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 53515 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 372936 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 372881 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 372880 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 372821 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| || | |||| || || |||||| || || || | |||||| | || || Sbjct 372820 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 372761 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTA 53690 ||| || || || || || | || ||||||||| |||| || | | Sbjct 372760 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 372702 Query 53691 CAA--ACATGTTCAATG-CAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATC 53745 ||| | | | || | ||||||| ||||||||||||||||| || || | | || Sbjct 372701 CAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--T 372644 Query 53746 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 372643 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 372584 Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 372583 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 372524 Query 53866 GGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | | || || ||| | | || || || | || | | | Sbjct 372523 AGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCCT 372466 Query 53926 TCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | |||| ||| | | ||| | | ||| || || |||||||||| | |||||| Sbjct 372465 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 372406 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 54040 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 372405 CTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCATG 372349 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 372348 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCA 372289 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| ||| || | ||| | | || |||| ||||| |||||||| || || Sbjct 372288 TGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATT 372229 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | || | || || || ||| || ||||| || || ||||| |||| ||||||| Sbjct 372228 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 372169 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || ||| ||||| | ||||| ||| ||||| || || ||||| ||| Sbjct 372168 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 372109 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | | | ||||||||| | || | || | || ||||| | ||| || |||| Sbjct 372108 GTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCG 372049 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 ||| ||| || ||| |||| || | ||| ||| || || | |||| |||| Sbjct 372048 CATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAA 371989 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||||||| | || || || | |||||| | || || | || || ||| Sbjct 371988 CAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 371929 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || |||||| || | | | || || || | || | || ||||| | |||| Sbjct 371928 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 371869 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || | || ||||| | | || || |||||||| || | ||||||| ||| Sbjct 371868 ATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 371809 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || || | |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 371808 TTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 371752 Score = 233 bits (258), Expect = 2e-56 Identities = 588/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Plus Query 23819 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 23875 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 82976 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 83035 Query 23876 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATA 23935 ||||||||||||| | ||| ||| ||||| |||| | ||||| | ||| || || Sbjct 83036 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 83095 Query 23936 GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 |||| || || |||| || ||| |||||||| || ||||| || |||||| Sbjct 83096 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 83155 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 83156 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 83215 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 24111 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 83216 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 83269 Query 24112 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 24168 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 83270 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 83328 Query 24169 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 24228 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 83329 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 83388 Query 24229 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTT 24287 | | | |||| | | |||||||| | ||||||||| || || || |||||| |||| Sbjct 83389 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 83447 Query 24288 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 24344 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 83448 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 83504 Query 24345 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 24404 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 83505 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 83564 Query 24405 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 24462 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 83565 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 83622 Query 24463 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAA 24521 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 83623 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 83681 Query 24522 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 24581 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 83682 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 83741 Query 24582 TTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 24639 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 83742 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 83799 Query 24640 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 | |||||||||||| || || ||||||||||| Sbjct 83800 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 83836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721347668320