Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 367 1e-96 >seq2 Length=1244090 Score = 367 bits (406), Expect = 1e-96 Identities = 1220/1870 (65%), Gaps = 56/1870 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || |||| |||||| || || ||| Sbjct 373599 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTT 373540 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 373539 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 373480 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 373479 TCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 373420 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 373419 TC--AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTATATCCT 373362 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 373361 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGCTTA 373306 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | ||| |||||||| || Sbjct 373305 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTAC 373247 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| ||| || | ||| || || || |||| |||| Sbjct 373246 AAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACT 373187 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||| | || Sbjct 373186 CTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGA 373127 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||| | | ||| || | ||| || || |||||| || || || Sbjct 373126 ATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA-AAGTCCAG 373068 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 373067 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 373008 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || || || ||| || || || || |||| || || || |||| Sbjct 373007 AATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCAT 372948 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| || |||||| ||||||| | || ||| | || ||| ||| || Sbjct 372947 AATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCA 372888 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || || || ||| || || | || |||| || || || | || | || Sbjct 372887 TA--CGAAGCATCATGAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 372831 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 || | ||| || | | ||||| | | | |||||| | || || | ||||| Sbjct 372830 GTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTAT 372771 Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATACG 37668 | | ||| || ||| | ||||||| | | | ||||| || || || || ||| Sbjct 372770 TCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-ACG 372717 Query 37669 T--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | | |||| ||| || || | |||||| | |||||||| || |||| Sbjct 372716 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 372657 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 |||| || | | || | ||| ||| || ||||| || | ||||| || ||| |||| Sbjct 372656 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 372597 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 ||||||| | || || ||| |||| || ||||||||| ||| | || || | Sbjct 372596 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCC 372537 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCT 37899 | || |||||||||| | || | ||| || |||| ||||| | ||| | Sbjct 372536 CCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGTT 372481 Query 37900 TTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCAT 37956 || || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 372480 TTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAA 372421 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 372420 ACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCA 372361 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 372360 ACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATC 372301 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || |||||| || | | ||| || | | |||| ||||||||||| Sbjct 372300 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 372241 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 372240 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 372181 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 372180 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 372121 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 ||||| | ||| | ||| |||||||||| | || || | ||||||||| || || Sbjct 372120 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCA-GTCTT 372062 Query 38317 GATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || | ||||||| ||| || ||||| ||||| | ||| || || || Sbjct 372061 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 372002 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 |||| ||||||| ||||||||||| || || || | ||||| | ||| || Sbjct 372001 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 371942 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTAT 38495 | |||||| | || |||||| ||| || | | ||||||||| | | || | || || Sbjct 371941 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 371882 Query 38496 ATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT 38555 |||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 371881 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 371822 Query 38556 TTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| ||| Sbjct 371821 TTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATA 371762 Query 38616 TGAATAATCT 38625 | | ||||| Sbjct 371761 TTCAAAATCT 371752 Score = 219 bits (242), Expect = 4e-52 Identities = 592/878 (67%), Gaps = 46/878 (5%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 83005 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 83064 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 83065 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 83124 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 83125 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 83184 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 83185 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 83239 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 83240 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 83296 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 83297 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 83356 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 83357 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 83416 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | ||| | | |||| Sbjct 83417 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGTTCAGAATTCATCC 83475 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || ||||||||||| || ||| || || || | ||| | Sbjct 83476 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 83535 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || |||| | | |||| |||| || | ||| ||| ||| Sbjct 83536 ---GCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 83592 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || |||| Sbjct 83593 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATT 83651 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | ||||| |||||||| | || Sbjct 83652 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 83710 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | | ||| ||||| | | |||| ||||||| | | ||||| Sbjct 83711 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 83767 Query 12103 ATCATCTA-AATCT----TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||| |||| |||| || ||| ||||| |||| ||| |||||| ||| | Sbjct 83768 ATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCA 83822 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | || |||||||||| ||| ||||| | || ||||| Sbjct 83823 GCTTTTTTATACATTGACCAAATATCTT--TAATTAAT 83858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524600876960