Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq7 104 2e-17 >seq1 Length=1279005 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || ||||| |||| ||||| || || ||||| |||||||| || || | ||| || Sbjct 550024 AGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 550083 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||||||| ||||| || | |||| || || || || || |||||||| || Sbjct 550084 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCC 550143 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| || || ||| || | || | || ||||||| || ||||| | || Sbjct 550144 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 550203 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || |||| |||||| ||||||||||||||| Sbjct 550204 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATC 550242 >seq7 Length=900255 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||||||||| |||| ||| | || || || ||||| || || || || Sbjct 544400 ATACCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 544341 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||| || |||||||||||||| | ||||| ||||| || || || Sbjct 544340 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 544281 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||||||||| ||| || | || | || || |||| || Sbjct 544280 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 544221 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | ||| || |||||||| ||||| Sbjct 544220 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 544171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || ||||| |||| || | || || || ||||| || || ||||| || ||| || Sbjct 544160 AGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTA 544101 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || |||||||||||||| | ||||| ||||| || || || || || ||||| Sbjct 544100 CCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCC 544041 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| ||||| ||| || | || | || || |||| || ||||| | ||| Sbjct 544040 TTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTG 543981 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | ||| || |||||||| ||||| Sbjct 543980 ATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 543943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| |||| || | || || || ||||| || || ||||| Sbjct 544628 ATTCCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 544569 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||| || |||||||||||||| | ||||| ||||| || || || Sbjct 544568 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 544509 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||| ||||| ||| || | || | || || |||| || Sbjct 544508 GGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 544449 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | ||| || || ||||| ||||| Sbjct 544448 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 544399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003007898640