Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 280 2e-70 >seq2 Length=1244090 Score = 280 bits (310), Expect = 2e-70 Identities = 715/1075 (67%), Gaps = 26/1075 (2%) Strand=Plus/Minus Query 47825 AATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAA---ACCTATTAAG 47878 || |||| |||| |||| |||||||||| ||||||||| || ||| || | ||| Sbjct 372745 AACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAG 372686 Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATT 47936 | ||||| || |||||||| || || || || | ||| |||| |||| ||| ||| Sbjct 372685 GCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TAGTGTATTCTATGATT 372628 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA-TTNNNNTTGTT 47995 || | |||| |||| | ||||| |||||||||| || ||| || | || Sbjct 372627 TCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTT 372568 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || || || || ||| ||||| ||||| || || || || |||| | | ||| | Sbjct 372567 GCA-GCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAA 372509 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTT---CGTATTT 48112 ||||| || || || || | | | | | | |||| | || | Sbjct 372508 GAACCAAAGTTTCTGCGCTTTCATC---GTTTTCCTTCCACGGCCTTGTTTCTCATACTC 372452 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 ||||| ||||| ||| ||||| || | |||| | || || ||||||| || Sbjct 372451 TTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGG 372392 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 ||||| | | |||||| | ||| || | ||||| ||| || | ||| || | ||| Sbjct 372391 GCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCA 372332 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 ||| || ||| | ||| | | ||| | ||||| || ||| |||| | ||| ||| Sbjct 372331 AAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTC 372272 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 || ||| || | | |||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 372271 AATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACG 372212 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || || |||||||| ||||| || ||||| | |||||||| | | ||| || | Sbjct 372211 CTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAAT 372152 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 | ||||| ||| | ||||| ||||| |||||| ||| | |||| |||||||| Sbjct 372151 TAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACT 372092 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTA--GATATTAGAGCACACCGTTTAAGGGTA 48530 | || | || | |||||||| | ||| || || | ||| ||| || || Sbjct 372091 TACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTG 372034 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 ||| | || || | ||| ||| ||| || | | || ||||||| |||||||| Sbjct 372033 TCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGA 371974 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 || | || ||||||||||| | ||| || | ||||||| |||| |||| | ||| Sbjct 371973 GGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGAT 371914 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 ||||| | ||||||||||| ||| || ||||| | ||| ||||| ||| || Sbjct 371913 AACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACAAGAAACC 371854 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | | || ||| |||||||| |||| |||||| | ||||| | |||||| ||| Sbjct 371853 CGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGAT 371794 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGA 48829 |||| | ||||| || ||||||| | ||| ||| || || | | ||| |||| Sbjct 371793 CTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATC-TTTTGAAAAATCAATTTT 371735 Query 48830 TGAATTTATTCTTTCCTTATGTTTATATACTACATCCAT-TACATTTTTTGATAT 48883 |||||| |||||||| ||| ||| || || | ||| |||| |||||| || Sbjct 371734 TGAATTAATTCTTTCTCTAT-TTTCCATGATAAAATCATAAACATGTTTTGAAAT 371681 Score = 228 bits (252), Expect = 9e-55 Identities = 584/871 (67%), Gaps = 51/871 (6%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| ||||||| ||||| ||||| |||||||| || | | ||| ||| | Sbjct 83005 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 83064 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| ||||| || || || |||||| | |||| || | || ||| Sbjct 83065 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCC-AAGGCAAAAAGT 83123 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| | ||| | | ||||| || || | Sbjct 83124 AATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGA 83183 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||||| || | || |||||| | | ||| | | || || |||||||| || Sbjct 83184 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 83243 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| | | | | || | ||| |||| | || ||||| |||| Sbjct 83244 TGTTGTACTCTAGGAGC--TGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCAA 83301 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||| || || || || | ||| || | ||||||||||||||| | ||||||| Sbjct 83302 AGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCA 83361 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | ||||| | |||||| | ||| || || | | |||| | | |||||||| | || ||| Sbjct 83362 TAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAATTCCT 83420 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCA 19145 || || || || ||| | |||||| || || ||| || | || ||||| Sbjct 83421 TCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCCA 83476 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||| |||||| || || |||||||| ||| | || ||| | |||| | Sbjct 83477 TTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCT---------TCAATATGAG-AAATTG 83526 Query 19206 ATACATACGCTCATCTGTA--TCTTTAACAT-----ATGCATCTATCAATAA--ACTGTA 19256 | || | | ||| || ||||||| || || |||||||||||| | || | Sbjct 83527 CTTCAAA-GAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAA 83585 Query 19257 CA--TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 | |||| ||| || | ||| |||| ||| ||||| | ||| | ||| |||||| Sbjct 83586 TAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCT 83645 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||| |||| ||| ||| || || | | || ||||| |||| || |||||||| Sbjct 83646 GGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTT 83705 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAATGTA 19431 || ||||| |||||||| || | ||| ||||||||| ||||| ||| |||| Sbjct 83706 GCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCT----TTAAGACT 83761 Query 19432 TTCC-AATCATTAATATCTT----TAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| |||| || |||||| ||||| ||||| |||| ||| |||||| || | Sbjct 83762 TTCCCAATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATG 83817 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATC 19517 | || |||||||||||||| ||| ||||| Sbjct 83818 CTTCAGCTTTTTTATACATTGACCAAATATC 83848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108561103760