Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-58 >seq2 Length=1244090 Score = 241 bits (266), Expect = 2e-58 Identities = 592/886 (67%), Gaps = 45/886 (5%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||||||| ||||||| ||||||| || || || || |||| Sbjct 82991 CATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTG 83050 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| ||| ||||| ||||||| |||||||| || || || | | || | Sbjct 83051 AAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGA-AT-A 83108 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | || | || | ||||| ||||||||||| || |||| ||| ||| || Sbjct 83109 TCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAG 83168 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACA 37109 || |||||||| || | || |||| | || |||||| | |||| | | ||| Sbjct 83169 TTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACA 83228 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG--GATATTTTAAATAT---- 37163 || ||| |||| | | || | | | || | | || ||||||| | Sbjct 83229 GCTTCTG-----ATATGA----TTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGG 83279 Query 37164 ---TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| | | |||||| ||||| ||| ||| | ||||||||| | ||| || | |||| Sbjct 83280 GCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCA 83339 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 |||||||| || | ||| ||||| | || | |||||||| |||||| ||||| ||||| Sbjct 83340 TTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAA 83398 Query 37281 GAT-CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 | | |||||||| | ||| |||||||| || ||| | | || | | | | |||| Sbjct 83399 GCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGA 83458 Query 37340 TGAACTATAATCAGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 | |||||| |||||||| ||| ||| ||||| || ||||||| ||| Sbjct 83459 TCGT------TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTC 83512 Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 ||| |||||||| ||||| | | ||||| | |||| || ||||| |||| Sbjct 83513 AATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATC 83572 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 ||| ||||| ||| ||||| || || | |||||||| || |||||| ||||| | Sbjct 83573 AATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATA 83632 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 || ||||| | || ||| | || ||| || | ||||||||||| |||| Sbjct 83633 CATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAAC 83692 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TC 37633 || |||||||| || |||||||| || | || ||||| ||||||||||||||| || Sbjct 83693 AATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTC 83752 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACGGT 37690 ||| | | ||| |||||| || |||||| || ||||| ||||| ||| Sbjct 83753 -TTTAAGA--CTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAAC--- 83806 Query 37691 CCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 |||||| ||| || ||||||||| | ||||||||| ||| Sbjct 83807 CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 83852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316548265360