Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-37 seq1 132 7e-26 >seq2 Length=1244090 Score = 170 bits (188), Expect = 3e-37 Identities = 565/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| | || |||||||| || || || |||| | ||| || | | Sbjct 83005 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 83064 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAAT 17983 ||| ||||||| ||||||| || || |||||| ||| || | | | | Sbjct 83065 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 83123 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAA-TTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| | ||| || || | |||||||| | || Sbjct 83124 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 83182 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| ||| || ||| | | | || | ||||||| ||| ||| || Sbjct 83183 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 83242 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| |||| ||| |||||| | ||| | | || ||||| |||||| || Sbjct 83243 TTGTTGTACTCTAGGAGCTGGTAATTTAA-ATTTAAGGGCTTT--ATATATTAAACAAGC 83299 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 ||| |||| || | ||||||||| | | || ||| ||| ||| ||| || | || | Sbjct 83300 AAAGTCAGCATGGAGACCTTCATCAC-GACTAATAAGTTCATTAGAAAATGTGAGTCCAG 83358 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 83359 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 83418 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 | ||||| |||| ||| | || | ||||||||||||| || | |||| Sbjct 83419 CTTCAACAGCACA-GAATCCAATAATTCTTTCAGCAAAA-------GATCGTTCAGAATT 83470 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||||| |||||||||| ||| | | ||| || || | Sbjct 83471 CATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTC 83530 Query 18397 AAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || | | ||| | |||||| ||| | ||||| | || || | || ||||| Sbjct 83531 AA--AGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAA 83588 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| |||||| ||| |||| || |||||| |||| || ||| || || || Sbjct 83589 GTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGT 83648 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| || || ||| || || || | || || || |||| || || ||| | Sbjct 83649 ATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCA 83708 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || ||||| || || ||||| || |||||| ||||| || || ||| | | ||| Sbjct 83709 GCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAA 83768 Query 18635 TCATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || |||| |||||| |||||||| ||||| | |||||| |||| ||| || | Sbjct 83769 TC-TCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 83827 Query 18694 TTTGTACATTTTATAAATATCTT 18716 ||| |||||| ||||||||| Sbjct 83828 TTTATACATTGACCAAATATCTT 83850 >seq1 Length=1279005 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| ||| | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 550247 AAGAAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAA 550188 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| |||| || || || || || || ||||| || ||||| ||||| Sbjct 550187 CCTTCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCT 550128 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | |||| | ||| || ||||| | |||||| |||||| |||| || Sbjct 550127 GATCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGAC 550068 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || ||||| || ||| | || | |||||||| || ||| | ||||||||||||| Sbjct 550067 TACAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGTGTAA 550010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871688954400