Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 seq1 113 1e-19 >seq7 Length=900255 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||||||||||| ||| ||| || Sbjct 543946 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 544005 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||| || || |||||||| || || ||| Sbjct 544006 ACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAA 544065 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | ||||||||| | Sbjct 544066 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 544125 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| | ||| | || ||||||||| || Sbjct 544126 CAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGA 544164 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| ||| ||| || ||| | || || ||| | Sbjct 544423 ACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAGAATGTTAAGGCA 544482 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || |||||||| || || ||| | | ||||| || ||||| Sbjct 544483 AAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 544542 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 544543 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 544602 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || ||||||||| || Sbjct 544603 TTAGTCTTGAGACTTAGA 544620 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | |||||||| || |||||||||||||| ||| ||| || Sbjct 544174 CAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 544233 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || || ||| Sbjct 544234 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 544293 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | || |||||| | Sbjct 544294 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 544353 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||||||| | || | || ||||| || Sbjct 544354 CAAAAAGAGTCTACTTTACATTTAGTATTGAGGCT 544388 >seq1 Length=1279005 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | |||||||| || ||||| |||||||| ||| ||| || || | Sbjct 550233 TTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTAT 550174 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||| || || || || || ||| || || || | || Sbjct 550173 TGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAACAGCGTCT 550114 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| ||||||||||| || ||| | | || ||||| ||||||| Sbjct 550113 GATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAA 550054 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | || ||||||||| || Sbjct 550053 GGAGTCCACTTTGCATTTAGTATTGAGACTTAGA 550020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820285169314