Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 >seq2 Length=1244090 Score = 170 bits (188), Expect = 2e-37 Identities = 902/1413 (64%), Gaps = 48/1413 (3%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| ||||| |||| ||| ||||| || | ||||||||| | | || || Sbjct 371826 TGGAAAGACCACA--ACATCTTCTGATGCGGGTTTCTTGTGGTATTCATTGTGGTGATAT 371883 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | || ||||| || | | || ||| ||| || | ||| ||||||| Sbjct 371884 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 371942 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || || |||| |||||||| ||| || | || | Sbjct 371943 CCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 372002 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||||| || || || || | || |||||| | | Sbjct 372003 TTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--CGCAAACATTAG 372060 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || || ||||| || | | || | |||| | | || ||| Sbjct 372061 TAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACTGGTTCATATAT 372120 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || |||||||| ||| |||| | ||||| ||||| ||||| | ||| | ||| Sbjct 372121 TCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACAC 372180 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 372181 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 372240 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 |||||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 372241 ACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAGAATCATGGAAAGGAAGA 372300 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | || ||||||||||| | || || ||| |||| ||||| |||||| | ||||| Sbjct 372301 GATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAGT 372360 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGATG 104804 |||| || | ||||| |||| | || ||||| || ||| || | |||| Sbjct 372361 TGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGATG 372419 Query 104805 CCGTGGGTGAGGAGTTT--GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 ||| || || ||| |||| || || | |||| ||| || |||| || | | Sbjct 372420 TTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAAG 372477 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACTG 104921 ||| || ||| || || | | || ||| | || |||||| ||||| | Sbjct 372478 GAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACGG 372536 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTG 104980 | ||||||| || ||| ||||| | ||| || | || ||||| || || |||||| Sbjct 372537 GGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTTG 372595 Query 104981 GGTGTGATCAAGAGTTCC----AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | || | | ||| | || | || ||||||||| | |||| || ||| || Sbjct 372596 G----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCAAGGA 372651 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 105096 || || || ||||| || || || || | || || |||| || ||| | | | Sbjct 372652 CGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCGTTGATAAAAATAA 372711 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 ||||| ||||||| ||| || | | ||||||||||| | || | || | || Sbjct 372712 CAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGAA 372771 Query 105157 CAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | ||||| | || ||| || | | | ||| || | || || ||| | || Sbjct 372772 TAAATTGATTGACGTTGGATATTATT--CTCTTAAAGAATG-TACAAACTCGAATTTAAG 372828 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTATTCATTCTTTGTCGCC 105272 ||| |||||| | || | || |||| || ||||| || ||| ||||| | ||| Sbjct 372829 ACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTCATGATGCTTCGTA 372887 Query 105273 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 ||| || || || | ||| ||| | | ||| | || ||||| || ||| Sbjct 372888 TGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTTTGAAGTTATCTATT 372947 Query 105333 ACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 | || ||||| || || || | ||| | ||||| |||||||||| ||||| | | Sbjct 372948 ATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCCATACGAAACATATT 373007 Query 105393 AGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACCAA 105450 ||||| || || | | |||| || |||||||||||||||| | || | |||| Sbjct 373008 CCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACCAG 373064 Query 105451 GCT----TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 105506 || | | || ||||| | || || || | || | | ||| |||||| Sbjct 373065 ACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGTA 373124 Query 105507 ACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 105566 | ||| | || |||||||||||||||| ||||| ||||||| || ||||| |||| Sbjct 373125 ATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAATG 373184 Query 105567 AATGCTTTGAACCCTACACGACGAACATCTATC 105599 | | ||||| || | ||| ||||||| |||| Sbjct 373185 AGAGTTTTGAGCCATTCACCTCGAACATTTATC 373217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260552114160