Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001307845.1_202015-10- 07] 34 sequences; 9,136,308 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-14 >seq2 Length=1244090 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 || ||||| ||||| | || |||| || ||||| | | || || || || || || Sbjct 372155 CCGATGCTGCGCGTTTATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGT 372214 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || || | | || || || | || |||||||||| || || | || || | ||| Sbjct 372215 AAAGGTGCCATTGCAATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAA 372274 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGG 19603 | | ||| || || | || |||||| | |||||||| ||||| | ||| | ||| Sbjct 372275 ATTAGGAAGAATCATGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGG 372334 Query 19604 ATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCG 19663 |||| || || |||||||| | ||||||||||| |||| ||| || |||||||| Sbjct 372335 GTTCCTGATCTGTTCATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCA 372394 Query 19664 CACGAATGC 19672 | |||||| Sbjct 372395 GATGAATGC 372403 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 || ||| | || || | ||||| ||| ||| ||| || | |||||||| || | Sbjct 372438 TTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTC 372379 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || || | ||||||||||| | |||||||| || || || | ||| ||||| | ||| Sbjct 372378 CAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAG 372319 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 || ||||| || | |||||| || | || || ||| | | || | ||| || | Sbjct 372318 AGATCGCGACATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACA 372259 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || ||||||| || |||| ||| || || | | ||| || ||||| || || || Sbjct 372258 ACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCT 372199 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 || | | |||| || |||| || |||| || ||||| || Sbjct 372198 TGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGG 372155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCA 59978 || |||||| | |||||||||||||| | | ||||||| | ||| | ||| ||||| Sbjct 83509 GCTGTTAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATTCTGAACGATCTTTTGCT 83450 Query 59979 CAACGTCTCA-TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 || | | | | | || || ||| || |||||||| | || ||||| || |||| Sbjct 83449 GAAAGAATTATTGGATTCTG--TGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTG 83392 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 | ||||| ||||| ||||| ||||| || ||||| || || | || || || || || | Sbjct 83391 CAATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTA 83332 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || || || || || |||||| || ||||| Sbjct 83331 TTAGTCGTGATGAAGGTCTCCATGCTGACTTTGC 83298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524566876960