Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq123 145 8e-30 >seq123 Length=14370 Score = 145 bits (160), Expect = 8e-30 Identities = 557/863 (65%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||||| |||||||| || || || || |||| | ||| ||| | Sbjct 8505 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 8564 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| ||||||| ||||| | || | ||||| | | ||| | | | || Sbjct 8565 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 8624 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||||||| || |||||||| |||||||| ||| | | | |||||||| || | | Sbjct 8625 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 8684 Query 21366 TTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||||||| | |||| |||| || |||| | || ||||| || || Sbjct 8685 CAACAGGAAGAGAGTCA--CAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 8742 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAA---TAATTG-TTTAAACATCAAACATG 21479 | | || |||| | || || || || ||| | |||| | || ||||| | Sbjct 8743 TTGTTGTACTCTAGGAG--CT--GGTAATTTAAATTTAAGGGCTTTATATATTAAACAAG 8798 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||| ||| | ||||||||| | ||| || | ||||||||||||||| | || | Sbjct 8799 CAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 8858 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 |||| | ||| | ||||| | |||||| |||| | |||| ||| || ||||| | ||| Sbjct 8859 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATT 8917 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT--A 21656 || ||||| ||| ||| ||| | || |||| | | |||| || | ||| | Sbjct 8918 CCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAA---AGATCGTTCA--GAATTCA 8972 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||||||| |||||||| ||| || | ||||| | ||||| | ||| || || Sbjct 8973 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGC--TTC 9030 Query 21717 AAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 ||||| |||| ||| | | ||| || || ||| | Sbjct 9031 AAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGT 9090 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||| |||||| | ||| || | || ||||| | ||| | ||| || |||| Sbjct 9091 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTAT 9150 Query 21835 TTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||| | || || |||| | || |||||||| | || || |||||||| || | Sbjct 9151 TTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 9209 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| ||||| || | | ||| ||||||| || ||| ||| | | ||| ||||| Sbjct 9210 CAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 9269 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 || ||||| || ||| | |||||||| |||||| || ||| |||| Sbjct 9270 CTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 9329 Query 22014 TATACATAATCCAGATATCATTA 22036 ||||||| ||| ||||| ||| Sbjct 9330 TATACATTGACCAAATATCTTTA 9352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897435727440