Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 298 7e-76 seq123 235 7e-57 >seq11 Length=141924 Score = 298 bits (330), Expect = 7e-76 Identities = 1197/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Minus Query 61849 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 61907 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 122517 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 122459 Query 61908 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 122458 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 122399 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 122398 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 122339 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62086 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 122338 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 122280 Query 62087 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62143 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 122279 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 122220 Query 62144 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62203 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 122219 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 122160 Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 122159 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 122100 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 122099 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 122040 Query 62324 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 62380 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 122039 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 121980 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62440 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 121979 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 121920 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 121919 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 121860 Query 62501 TCGAAGATCTTCTTATTT-AGATCTT-GCGCTTCCAGGCTATCAAATGG-ATAATTTAAG 62557 || ||||| | |||||| | |||| || | ||| | || |||| ||| ||| Sbjct 121859 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 121804 Query 62558 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 121803 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 121744 Query 62617 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62676 ||| || | |||| || || |||||| || || || | |||||| | ||| || Sbjct 121743 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 121684 Query 62677 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT----- 62731 ||| || || || || || | || ||||||||| || | |||| Sbjct 121683 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 121625 Query 62732 --ACAAACATGTTCAATG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62786 || ||| | | || | ||| ||| ||||||||||||||||| || || | | || Sbjct 121624 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 121568 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 121567 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 121508 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 121507 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 121448 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTT 62965 ||| | || || ||| | | || | || || || | || | | | Sbjct 121447 GAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGC 121391 Query 62966 TCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 | |||| ||| | | ||| | | || || || |||||||||| | || || Sbjct 121390 CTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 121331 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 63080 | |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 121330 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 121274 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 | || |||||||||| |||||| || ||| ||||| | ||| || || |||| Sbjct 121273 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 121214 Query 63141 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 121213 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 121154 Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 121153 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 121094 Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTC 63320 |||| | || ||| ||||| | ||||| ||| | ||||| || ||| ||||| | Sbjct 121093 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 121034 Query 63321 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 || | | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 121033 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 120974 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 ||||| ||| || ||| |||| || | ||| ||| || || | |||| || Sbjct 120973 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 120914 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 |||| |||||||| | || || || | |||||| | || || | || |||| Sbjct 120913 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 120854 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 120853 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 120794 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 |||| || | || ||||| | | || || |||||||| || | ||||||| | Sbjct 120793 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 120734 Query 63621 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 120733 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 120675 >seq123 Length=14370 Score = 235 bits (260), Expect = 7e-57 Identities = 587/876 (67%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 32345 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 32401 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 8476 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 8535 Query 32402 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA 32461 ||||||||||||| | ||| ||| ||||| |||| || ||||| | ||| || || Sbjct 8536 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 8595 Query 32462 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 32521 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 8596 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 8655 Query 32522 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 8656 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 8715 Query 32582 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG----AT 32637 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 8716 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 8769 Query 32638 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 32694 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 8770 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 8828 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 8829 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 8888 Query 32755 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 32813 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 8889 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 8947 Query 32814 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 32870 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 8948 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 9004 Query 32871 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 32930 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 9005 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 9064 Query 32931 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 32988 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 9065 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 9122 Query 32989 ATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAAT 33048 | | || | ||| || || | || |||| |||| || || | ||||||| | Sbjct 9123 AAGCATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGT 9182 Query 33049 TTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 33108 |||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 9183 TTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTC 9242 Query 33109 TTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 |||| ||| || || | | |||||| | |||||| | || ||| | ||||| Sbjct 9243 TTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTC 9300 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||||||||| || || ||||||||||| Sbjct 9301 AGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 9336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627992277600