Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq24 95.1 1e-14 seq4 84.2 2e-11 >seq24 Length=91993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 ||| || ||||||| ||||||||||||||||| ||||| || | || | | ||| Sbjct 36579 CAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATC 36638 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 |||| |||||||| || ||||||| || || ||||| || || || |||||||| | Sbjct 36639 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTAT- 36697 Query 127021 CGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG 127079 | ||| | | || ||| | | || | || || | | || ||||| | || | | Sbjct 36698 CTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 36757 Query 127080 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||| ||| || |||||||||||||| Sbjct 36758 TCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 36791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || ||| || || |||| || |||||||||||||| |||||||| Sbjct 36793 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 36852 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| |||| |||||||| || ||||||| || || ||||| || || Sbjct 36853 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 36912 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| | | || ||| | | || | || || | | || || Sbjct 36913 ATTCCTTCCTTATCC-TGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAAC 36971 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||| || |||||||||||||| Sbjct 36972 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 37019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || || |||| || |||||||||||||| |||||||| | || | | Sbjct 36348 TCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACC 36407 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| |||||||| || ||||||| || || ||||| || || || || ||||| Sbjct 36408 ATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTT 36467 Query 127018 GTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| | | || ||| | | || | || || | | || ||||| | || | Sbjct 36468 ATCC-TGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGA 36526 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || || ||||||||||| Sbjct 36527 TAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 36563 >seq4 Length=220233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || ||||| | || ||||| || || |||||||| || | || | | Sbjct 205016 TCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACC 205075 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | || |||||||| |||||| ||||| ||||| ||||| ||||||||||| Sbjct 205076 ATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCCTT 205135 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | | || | || || | | || ||||| | || | Sbjct 205136 ATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGAT 205195 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || | |||||| |||||||| ||||| Sbjct 205196 GGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 205231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497792457440