Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq24 89.7 4e-13 >seq4 Length=220233 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||| ||||| ||||| || || ||||| || ||| |||||| Sbjct 205234 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 205175 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | ||| ||| ||| || || ||||| | || ||| Sbjct 205174 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 205115 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | || |||||||| || || |||||||||||| || |||| | | || || Sbjct 205114 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 205055 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 || || || || || || ||| |||| | ||||| ||| | |||| || |||| Sbjct 205054 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGTGTAAT 204999 >seq24 Length=91993 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || ||||| || || || || || || || || || ||| ||||| Sbjct 37023 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 36964 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 |||||| || | | || | ||| ||| || || || || ||| | || || Sbjct 36963 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGA 36904 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | |||||||| || |||||||| || ||| || |||| | | ||||| Sbjct 36903 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 36844 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || ||| | ||| | || || ||| | |||| || || Sbjct 36843 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 36790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || || || || ||| ||||||||| Sbjct 36791 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 36732 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || || || |||||| | || |||||| Sbjct 36731 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 36672 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || |||||||| || ||| || |||| | | || || ||| Sbjct 36671 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 36612 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||||||||| |||||| | || | ||||| || Sbjct 36611 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 36577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || || || || || ||| ||||||||| Sbjct 36563 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 36504 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || || || || ||| | || |||||| Sbjct 36503 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 36444 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || |||||||| || ||| || |||| | | ||||| ||| Sbjct 36443 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 36384 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || ||| | ||| | || || ||| | |||| || || Sbjct 36383 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGAAT 36334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402176581774