Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq123 170 3e-37 seq4 132 7e-26 >seq123 Length=14370 Score = 170 bits (188), Expect = 3e-37 Identities = 565/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| | || |||||||| || || || |||| | ||| || | | Sbjct 8505 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 8564 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAAT 17983 ||| ||||||| ||||||| || || |||||| ||| || | | | | Sbjct 8565 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 8623 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAA-TTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| | ||| || || | |||||||| | || Sbjct 8624 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 8682 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| |||| ||| || ||| | | | || | ||||||| ||| ||| || Sbjct 8683 ATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 8742 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| |||| ||| |||||| | ||| | | || ||||| |||||| || Sbjct 8743 TTGTTGTACTCTAGGAGCTGGTAATTTAA-ATTTAAGGGCTTT--ATATATTAAACAAGC 8799 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 ||| |||| || | ||||||||| | | || ||| ||| ||| ||| || | || | Sbjct 8800 AAAGTCAGCATGGAGACCTTCATCAC-GACTAATAAGTTCATTAGAAAATGTGAGTCCAG 8858 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | |||||| |||||||| || | || |||| |||||| | || | Sbjct 8859 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 8918 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG---- 18336 | ||||| |||| ||| | || | ||||||||||||| || | |||| Sbjct 8919 CTTCAACAGCACA-GAATCCAATAATTCTTTCAGCAAAA-------GATCGTTCAGAATT 8970 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||||| |||||||||| ||| | | ||| || || | Sbjct 8971 CATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTC 9030 Query 18397 AAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || | | ||| | |||||| ||| | ||||| | || || | || ||||| Sbjct 9031 AA--AGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAA 9088 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| |||||| ||| |||| || |||||| |||| || ||| || || || Sbjct 9089 GTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGT 9148 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| || || ||| || || || | || || || |||| || || ||| | Sbjct 9149 ATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCA 9208 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || ||||| || || ||||| || |||||| ||||| || || ||| | | ||| Sbjct 9209 GCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAA 9268 Query 18635 TCATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || |||| |||||| |||||||| ||||| | |||||| |||| ||| || | Sbjct 9269 TC-TCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTT 9327 Query 18694 TTTGTACATTTTATAAATATCTT 18716 ||| |||||| ||||||||| Sbjct 9328 TTTATACATTGACCAAATATCTT 9350 >seq4 Length=220233 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| ||| | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 205237 AAGAAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAA 205178 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| |||| || || || || || || ||||| || ||||| ||||| Sbjct 205177 CCTTCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCT 205118 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| | |||| | ||| || ||||| | |||||| |||||| |||| || Sbjct 205117 GATCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGAC 205058 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || ||||| || ||| | || | |||||||| || ||| | ||||||||||||| Sbjct 205057 TACAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGTGTAA 205000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867370909600