Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq138 158 4e-33 seq11 114 4e-20 seq33 84.2 6e-11 seq15 84.2 6e-11 >seq138 Length=11335 Score = 158 bits (174), Expect = 4e-33 Identities = 354/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 1810 TCCTATCAAATCTTCCTGGACGTGTTAATGCAGGATCTAATACATCAGAACGATTTGTTC 1869 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 1870 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 1928 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 1929 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 1988 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 1989 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 2047 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 2048 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 2107 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | || | | Sbjct 2108 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCTAATAA 2167 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 2168 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 2225 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 2226 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 2282 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 2283 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 2323 >seq11 Length=141924 Score = 114 bits (126), Expect = 4e-20 Identities = 776/1233 (63%), Gaps = 56/1233 (5%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || |||||||| | |||||| | | ||||| ||||| Sbjct 121883 TCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCA 121824 Query 155373 GATGTAAATGCGATATC---CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 || ||| ||| |||| ||||| | ||| || | || |||| ||||| Sbjct 121823 GACTCGTATGGCATACGAAGCATCATGAAACA---GTCTGCGAGCCCTTGAATGCCAATC 121767 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC--TTCTTGTTTGGGTAAAAATTC- 155486 || | ||| ||||| || |||| | | |||| ||||| | | | | || || Sbjct 121766 CCCAATGGACGATGTCTTAAATT---CGAGTTTGTACATTCTT-TAAGAGAATAATATCC 121711 Query 155487 -ACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTT 155542 || ||||| | ||||| ||||| |||| || |||| || || ||| ||| || Sbjct 121710 AACGTCAATCAATTTATTCAAATTCCTCGTAATCA---CCTTCGTAACTTCTTTTAACTT 121654 Query 155543 CACATAGTCAAATGTTTT---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAG 155599 || | ||||| || || || | || || ||| | ||| |||||||||||||| Sbjct 121653 ATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAG 121594 Query 155600 ATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTT 155656 |||||| || ||| || ||| | ||| |||||||| || || ||| | ||| Sbjct 121593 ATTACAAACGGCAACTTC---GTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTT 121537 Query 155657 AGAACTCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||||| | || || ||||| ||||||||| ||| || || |||||| Sbjct 121536 A-----CTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCT 121482 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 || || ||| |||| || || ||||| || || || | | || | ||| || Sbjct 121481 TTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGT 121422 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCG 155829 | | || || || || | | ||||| |||||| | ||||||| || Sbjct 121421 TTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GCT 121364 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | |||| || || || ||| || ||| ||| | ||| ||||| | || | Sbjct 121363 TCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAG 121304 Query 155890 ACCAAATTTTATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATA 155947 |||| || || || | || || |||| || | |||| |||||| ||| Sbjct 121303 TCCAATCTTGAT--CCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGG 121246 Query 155948 GAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || | | | | | ||| || | || |||||||||| | || | || | Sbjct 121245 AAAGAGATCGCGA-CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACT 121187 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC-- 156064 | ||| |||| || ||| |||| ||| || |||| ||| || | ||| || Sbjct 121186 CTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTC 121127 Query 156065 -ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 ||| ||||| | ||||| |||||| | ||| | || | ||||| ||||| | |||| Sbjct 121126 CACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCAT 121067 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || | ||||| ||||| ||||||| ||||||| | | || |||| | | Sbjct 121066 TAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCA 121007 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 |||| ||||||| ||| ||| | ||||||| ||| || | || |||| Sbjct 121006 CCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATAC 120947 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | | || ||||| ||| || |||| | | || || | ||||||||| || | Sbjct 120946 CGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCG 120887 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 | || | || || ||||| |||||||||||| ||||||| || | || | | || | Sbjct 120886 TGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCAT 120827 Query 156364 ATGTCTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 |||| || | | || |||| || | | ||||||| ||| |||| |||| Sbjct 120826 ATGTTTCAAGTGCAGCT--TCAATATCACCACAATGAATACCACAAGAAACCCGCATCAG 120769 Query 156422 CATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAG 156481 | ||| || || | || |||| |||||| ||||| || | | ||| || Sbjct 120768 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 120709 Query 156482 AGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 |||||| || | ||||||||| | |||||| Sbjct 120708 AGTTTTGAAGGCAAAATAATCATATTCAAAATC 120676 Score = 105 bits (116), Expect = 2e-17 Identities = 282/426 (66%), Gaps = 14/426 (3%) Strand=Plus/Minus Query 154535 CAGATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAA 154594 || ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 122481 CAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 122422 Query 154595 TGATTTAGGCTCTGGGTCTTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAA 154654 | | | | | |||||| | |||| | |||||||| |||| |||| Sbjct 122421 CTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGG 122362 Query 154655 TCCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTA 154714 || | || |||||||||||||| |||||| || |||||||||||| |||| || Sbjct 122361 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATA 122302 Query 154715 TTTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAAT 154774 ||| |||| || || | | | |||| ||||| || || || || ||||| Sbjct 122301 AAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAAT 122242 Query 154775 AATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT- 154833 |||||| | ||| | || |||||||||| || | |||| |||| | || | Sbjct 122241 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 122182 Query 154834 ---ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCT--GCTG-TAAATATTAC 154887 ||||| || || | || ||||| | || | ||| | || ||||| || Sbjct 122181 CGGATTTACTA--CAAAG--AACTCACCAGATAG---TACCCTACGATGATAAATGTTCG 122129 Query 154888 TTGTAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCA 154947 || | ||||||||| | ||| || ||||||||||| || ||| |||||| |||| Sbjct 122128 AGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCA 122069 Query 154948 TGGGAG 154953 | |||| Sbjct 122068 TTGGAG 122063 >seq33 Length=78110 Score = 84.2 bits (92), Expect = 6e-11 Identities = 235/355 (66%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || |||| || || || Sbjct 75978 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTATTCCTAACAGTTC 76035 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| |||||||| ||| |||| | | || ||||| || | Sbjct 76036 TATCATATTGCACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 76095 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | || ||||||||||| || Sbjct 76096 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAA 76154 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 76155 AA-ACTTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCA 76213 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 ||| || || | || ||||||||||| | | || | | | | || |||| || Sbjct 76214 GGCCCATAATCATATTTCAAAAAGTGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATG 76273 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 || || || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 76274 CGTTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 76328 >seq15 Length=126465 Score = 84.2 bits (92), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| | |||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 10983 GAAATAAGGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 11042 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 11043 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 11096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808058022522