Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq74 114 2e-20 >seq74 Length=33375 Score = 114 bits (126), Expect = 2e-20 Identities = 269/401 (67%), Gaps = 24/401 (6%) Strand=Plus/Plus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA- 166009 |||| ||||| |||||| ||| |||||||| ||||| | | |||| | ||||| ||| Sbjct 1744 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 1803 Query 166010 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 166067 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 1804 CATCATTACAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 1860 Query 166068 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 166125 || | | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 1861 TAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 1920 Query 166126 -TGCTGCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAG 166184 |||||| || | ||||| | ||| || | | |||| | |||||| || || Sbjct 1921 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 1977 Query 166185 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTC 166232 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 1978 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 2037 Query 166233 ATTTTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 166292 ||| | ||||| |||| ||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 2038 ATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 2097 Query 166293 GGTCATGTTTTATACCTCAATATAATCCTTTAGAATTAATT 166333 || ||| | ||| | |||||||| ||| ||||| Sbjct 2098 GGAGTAGTTCAGTTCCTAACTATAATCCAAAAGATATAATT 2138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632485599503280