Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq74 95.1 2e-14 >seq74 Length=33375 Score = 95.1 bits (104), Expect = 2e-14 Identities = 257/388 (66%), Gaps = 24/388 (6%) Strand=Plus/Plus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA- 163057 |||| ||||| |||||| ||| |||||||| ||||| | | ||| | || || ||| Sbjct 1744 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 1803 Query 163058 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 1804 CATCATTACAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 1860 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || | | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 1861 TAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 1920 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| || | | |||| | |||||| || || Sbjct 1921 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 1977 Query 163233 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTC 163280 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 1978 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 2037 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | | ||| | |||||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 2038 ATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 2097 Query 163341 GGTCATGTTTTATCCCTCAATATAATCC 163368 || ||| | ||| | |||||||| Sbjct 2098 GGAGTAGTTCAGTTCCTAACTATAATCC 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635173582501680