Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq123 176 1e-38 seq74 134 3e-26 seq11 100 7e-16 seq7 100 7e-16 >seq123 Length=14370 Score = 176 bits (194), Expect = 1e-38 Identities = 546/825 (66%), Gaps = 25/825 (3%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| ||| ||| || | || ||| | ||||||||| ||| | | ||||| Sbjct 9336 ATGTATAAAAAAGCTGAAGCATCATTTTGGGTTACTGAAGAGATTGATCTAAGTCAAGAT 9277 Query 131525 ATTGATGATTGGGAAAAA-TTAACCTTGAA--TGAAAAAGATTTTGTTTCCAA-AGTTCT 131580 | | |||||||||| |||| || ||||| | ||||| | | || | ||| Sbjct 9276 ACTAGAGATTGGGAAAGTCTTAAA---GACCCTGAAAGACATTTTAT--CAAATACGTCT 9222 Query 131581 T-GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 | |||||||| || | |||||||||||||||||| ||||| | | | |||||| || Sbjct 9221 TAGCATTCTTTGCTGCAAGTGATGGCATTGTTATGGAAAACTTAGCAGTAAATTTCCTTA 9162 Query 131640 AAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTA 131699 |||||| | || || |||| | | || || | |||||| || ||||| | Sbjct 9161 GAGAAATACAAATACCAGAAGCCAGAATGTATTATGCTTTTCAAATGTCTATTGAACAAA 9102 Query 131700 TTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAA 131759 | ||||| || | ||||||||| | ||||| || | ||| ||| | | || Sbjct 9101 TACATAGTGAAACTTATTCATTACTTATTGATAGATATATTAC---TGATATTAAAGAAC 9045 Query 131760 AT-AAAT--TATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGG 131816 | |||| | ||||| || | | | || || ||||||||||||||||||||| Sbjct 9044 GTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTTAAAAAGAAAGCAGAATGGG 8985 Query 131817 CTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTT 131876 | | ||||||||| | ||| || | |||| || |||| || | | || | Sbjct 8984 CAACTAAATGGATGAATTCTGAA--CGATC-TTTTGCTGAAAGAATTATTGGATTCTGTG 8928 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||||||||| || | ||||| ||| ||||| ||||| || ||||||||||| || ||| Sbjct 8927 CTGTTGAAGGAATTCTATTTTCTGGTAGCTTT-TGTGCAATTTTTTGGCTTAAAAAACGT 8869 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCAT 131995 ||| | |||||||||||| |||| || ||| || | || | ||||||| | ||| Sbjct 8868 GGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCAT 8809 Query 131996 ACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATT 132055 |||| |||||| ||||| |||| | || |||| | | || | Sbjct 8808 GCTGACTTTGCTTGTTTAATATATAAAGCCCTTAAATTTAAATTACCAGCTCCTAGAGTA 8749 Query 132056 AAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCT 132115 ||||| | ||| ||||| ||||| | || | | ||| || || || | ||| Sbjct 8748 CAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCT 8689 Query 132116 TGCAATTTGATTGGGATGAA-TGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 || | ||||| ||||| | |||| |||| | || |||||||| |||||||| Sbjct 8688 GTTGATCTTATTGGTATGAACTCAAGACT-TATGGCCCAATATATTGAATTTGTTGCTGA 8630 Query 132175 TCGTTTAATTAACCAACTTGGATATTCC-AAGATTTATAACACCCAAAACCCCTATACAT 132233 | | ||| || |||||||||||| || || || ||| || || | | | Sbjct 8629 TAGATTACTT-TTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATT 8571 Query 132234 GGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 ||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 8570 GGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAA 8526 >seq74 Length=33375 Score = 134 bits (148), Expect = 3e-26 Identities = 812/1279 (63%), Gaps = 81/1279 (6%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 || || ||||||||||| ||||||||| ||||| || | | || || ||||| || Sbjct 852 GGAATCCCAAAACTTGAAGATGCAAACGAAGCTGGTGGACCCCATTCCAAAAAATGTACT 911 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 | | |||||||| || ||||||||| || | | |||| || |||||| || || Sbjct 912 CTTATACTTACTGAAGGTGATTCTGCTAAAACTTCTTGTCTTGCAGGATTATCTATTGTT 971 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | || | | ||| |||||||| || | |||||| | | |||| | | || Sbjct 972 GGTAGAGACTATTTTGGAGTATTTCCACTACGTGGTAAACTTTTAAATGTTAGAGA---- 1027 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 || | |||||| ||| || || ||||| |||| | ||| | Sbjct 1028 ----------AGCTTCATTTAAA-CAACAAATTGGTAATGTTGAAATACAAAATATTCTT 1076 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCA---AGTTTACGATAT 279361 ||||||||||||||| || ||||||| | || | || | |||| ||||| Sbjct 1077 AAAATATTGGGATTAGGTATTGGACAAAAATATGATAATGGACCAGTCAATTTAAGATAT 1136 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | || | |||| || |||||| ||||| ||||| ||||||||| | || Sbjct 1137 GGTTCTTTAATGCTAATGACTGATCAAGATCATGATGGTAGTCATATTAAAGGACTCATT 1196 Query 279422 CTTAATTGGGTTGATACTTTCTGGCCAGAATTG-TTGAATCAAAAT--TTTGTAAGTGTG 279478 |||||| | || || |||||| || || | | | | || ||| Sbjct 1197 ATTAATTTAATACATTATTATTGGCCAAGTTTAATTCATTTTAGAGGATTCTTAAAACAA 1256 Query 279479 TTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTATTCATTG 279538 ||| ||| || ||| |||| || | ||||| || ||| ||| | | | || Sbjct 1257 TTTGTAACTCCTATTGTTAAAGCTAAAAAAGGATCTAATGAAATTTCATTCTTTACTTTA 1316 Query 279539 CAGAAGTTTGAACAATGGA--AAGATTCAGT--TGAGAATTCAGCCTCATTCCATAC-CA 279593 | | | ||||||||||| |||| | | | | | | || | | | | | || Sbjct 1317 TATGAATATGAACAATGGAGAAAGAATAATTCATCAAACTTAAA--TGGATGGAGATTCA 1374 Query 279594 AGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTAAAAA-A 279652 |||||| ||||||||||| ||||| | | ||| ||||||||||||| ||| | Sbjct 1375 AGTATTATAAAGGTTTAGGTACATCTACAGATCTTGAATTTAAAGAATATTTTACAAAGA 1434 Query 279653 TTAACACTTCA-------GAATTTTAATGCTAATGAGAAATCAAC----TAATGCTCTTG 279701 || | | | || |||||| | || ||| ||||| | | || ||| Sbjct 1435 TTGAAAAT-CATAGTATTGAATTTGATTGG--ATGGATGATCAAGATGATGAAGCCATTG 1491 Query 279702 ATAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGG-TTGAGAAATTATGAT 279760 ||| || |||| ||| | |||| ||| | || |||||| |||| | |||| | Sbjct 1492 ATATGGCATTCAGTAAAAAAAGAACTGAAGATAGAAAGAACTGGATTGA-ATCTTATAAA 1550 Query 279761 -AAGGA-----TGAT-ATAATTG-ATGAAGAA-CAA---ACTAATGTGACTTGTGAAGAA 279808 ||||| || | || ||| || || || ||| | ||| | | | | || Sbjct 1551 GAAGGAACTTATGTTGATTATTCTATTAATAATCAATGCAGAAATTTAAGATATTTTGAT 1610 Query 279809 TTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCAT 279868 |||||| |||||||||| | ||| || |||||| | | | |||||||| || Sbjct 1611 TTTATTCATAAAGAACTTGTATTATTTAGTAGATATGATACTACTAGATCTATTCCAAAT 1670 Query 279869 TTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-----TTTCAAAA 279923 ||| | |||||||| |||||| ||| | || | || || ||| ||| |||| Sbjct 1671 TTATTAGATGGTTTAAAACCTGGACAAAGAAA-AGTACTTT---TTGCAACATTTAAAAA 1726 Query 279924 GAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAG 279983 || || ||| | || || ||||| || ||||| ||||||||| | |||||| | Sbjct 1727 AAAGCTTAATAATG-AACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTG 1785 Query 279984 GTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 ||||||||| || ||| | || | ||| || ||||||| | | || ||| ||||| Sbjct 1786 CTTATCATCATGGAGAATCATCATTACAAAGTACTATTGTTAATATGGCTCAAAATTTTG 1845 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | || || |||||||| | |||| ||||||||||||| | | | | Sbjct 1846 TTGGAAGTAATAATCTAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAG 1905 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATAT-TACA--A 280160 |||||||||| || ||||||||| ||| ||| | || ||| || | Sbjct 1906 GTGGAAAAGATGCAAGTGCTGCTCGTTATATATTTAC-------TAAGCTATCTAAATGG 1958 Query 280161 ACAAGTTAT-TTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGT 280216 || || ||| || || | ||||| || ||| |||| | || | |||||||| Sbjct 1959 ACTAGATATATTTTCCCAGAGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGA 2018 Query 280217 CTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCT 280276 | |||||||| |||||||| |||||| || || |||||| | || |||||| || Sbjct 2019 CAACAAATTGAACCTTTATATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACT 2078 Query 280277 CAAGGAATTGGAACAGGTT 280295 | |||||||| ||||||| Sbjct 2079 GATGGAATTGGTACAGGTT 2097 >seq11 Length=141924 Score = 100 bits (110), Expect = 7e-16 Identities = 321/491 (65%), Gaps = 23/491 (5%) Strand=Plus/Plus Query 112955 TGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTCTCTACTGTT 113014 ||||||| | ||||||||||| || ||| |||| | | || |||||| || | Sbjct 122001 TGATTGGGATTCGCTTAAAGATAGGATTTCCAAATATGGTATTCGTAATTCTCTATTGAT 122060 Query 113015 GGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCC 113074 | |||||||| ||||| || ||| |||| ||| | ||||| ||||| |||| ||||| Sbjct 122061 ATCTCCAATGCCAACAGCATCCACTTCACAAATTTTAGGTAACAATGAGAGTTTTGAGCC 122120 Query 113075 AATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAA 113134 | | || || |||||| || | || ||| | |||||||| ||||||| ||| Sbjct 122121 ATTCACCTCGAACATTTATCATCGTAGGGTACTATCTGGTGAGTT----CTTTGTAGTAA 122176 Query 113135 AT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATGAAGTGAAAAACT 113190 || | ||| | | || | || | | || |||| | || | || | Sbjct 122177 ATCCGCACTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATAGGCTTAAGCAGA 122236 Query 113191 CCATTATTGCTAATCAAGGTTCGGTTCAACAT---CTAAAATTGCCTGA----TTGCGTG 113243 |||||||| ||| | || ||||| || || | | | || || | |||| Sbjct 122237 ATATTATTGCAAATAATGGCAGTATTCAAAATATACTTACAATTCCGGAGGATATACGTG 122296 Query 113244 AAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCA 113303 || | || ||||||| | |||||||| |||||| |||||||||||||||||| Sbjct 122297 --AGCTTTA--TAAGACTGTATGGGAAATCAAGCAAAAGACAGTAATTGATATGGCTGCA 122352 Query 113304 GATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACA-CCTC 113362 ||| | || | | | |||||| || || ||||| | |||| | | | || Sbjct 122353 GATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAACATCCATATG--GAAAATGCTA 122410 Query 113363 AC-CAGATAAGGTGACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTA 113421 || | ||| | ||||| | ||||| || |||||||||||| |||||||||| | Sbjct 122411 ACTTTGCAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTCTAAAAACAGGCA 122470 Query 113422 TGTATTATTTG 113432 | ||||||||| Sbjct 122471 TTTATTATTTG 122481 >seq7 Length=190084 Score = 100 bits (110), Expect = 7e-16 Identities = 329/505 (65%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || ||| | |||| ||| | | || ||| | ||||||||||||| Sbjct 46679 TTAAAGGTAAAGAAGGACGTTTCAGAGGAAATTTGAGTGGTAAAAGAGTTGATTTTAGTG 46738 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 ||| | ||| || | ||||| || | ||| || ||||| | | ||| || || Sbjct 46739 GAAGGACTGTTATTTCTCCTGACCCTAATATTGAAGTTGATGAAGTTGTAGTACCTATGA 46798 Query 305106 AAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGA 305165 ||||| ||| | || | ||| || | |||||| | | |||||| | ||| | Sbjct 46799 TCATTGCAAAGAAATTGACTTATCCCGAAAGAGTTAATGCTATTAATATTGACTCTTTAA 46858 Query 305166 GACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACA 305225 || |||||| |||||| || | | ||||| || | |||| || || | Sbjct 46859 GAGAAGCTGTTCTAAATGGACATGATATTTGGCCAGGAGCATGCTATGTT-TATAAGA-- 46915 Query 305226 AGCAAAAGAAGACAATAT---CTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG- 305281 | || |||| ||| | ||| || ||| || || | || | | | Sbjct 46916 -GTAATGGAAGCAAATCTAGTCTTAGA----TATGCTAATAGAAGAGTTGTATCAGAGCG 46970 Query 305282 -CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAA 305340 ||||| ||| |||||||| |||||| |||| ||| || | ||||| Sbjct 46971 TCTTGAGATTGGAGATATTGTAGAAAGACATATGAAAACTGGAGATATCGTCTTATTCAA 47030 Query 305341 TAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TG 305399 ||| |||||| | |||| | | ||| ||| |||| ||||| ||| | | || Sbjct 47031 TAGACAACCAAGTTTACATAGACTTAGTATTATGTCTCACAAAGTTGTAGTTATGCCATG 47090 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || ||| |||| |||| | |||||||| | ||||||||||| ||||| ||||||| Sbjct 47091 GAGA-ACTTTTAGATTCAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTCGATGGAG 47149 Query 305460 ATGAAATGAATATGCATGTACCTCA 305484 ||||||||||| | ||| | ||||| Sbjct 47150 ATGAAATGAATCTTCATCTTCCTCA 47174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805105744266