Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq24 145 7e-30 seq4 118 9e-22 >seq24 Length=91993 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 36791 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 36732 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| |||||||| || || || || ||||| |||||| Sbjct 36731 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 36672 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || || |||||| Sbjct 36671 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 36612 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || |||||||| || ||| Sbjct 36611 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 36579 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 37019 ATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 36960 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 36959 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 36900 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 36899 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 36840 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 36839 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 36807 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| |||| ||| | ||||| ||||| || Sbjct 36563 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 36504 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || ||||| || ||||| |||||| Sbjct 36503 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 36444 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| || || || || | || ||||||||| Sbjct 36443 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 36384 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||||| || ||||| || || ||| Sbjct 36383 ATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 36351 >seq4 Length=220233 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| | || || | ||||| ||||| ||| Sbjct 205231 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 205172 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| || || || || || ||||| || || |||||| Sbjct 205171 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 205112 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||||||||| || || | || || ||||| Sbjct 205111 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 205052 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || |||||||| || || ||||| || ||| Sbjct 205051 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTG 205019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915649141120