Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 275 9e-69 seq123 223 5e-53 >seq11 Length=141924 Score = 275 bits (304), Expect = 9e-69 Identities = 1169/1824 (64%), Gaps = 46/1824 (3%) Strand=Plus/Minus Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 ||| || || || ||||||||||| |||| || || |||||||| || || || Sbjct 122478 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 122419 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | | | | | || | ||||| || |||| || || |||| | | | || Sbjct 122418 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 122359 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 ||||| || ||||| | || | |||||||| |||||||| | ||| || ||| Sbjct 122358 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 122299 Query 75595 TTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATATAAT 75651 | ||||| || |||| | | |||||||||| | ||||| | | ||| Sbjct 122298 CTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTGCAAT 122242 Query 75652 TGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 75708 |||||| | | | ||||| ||| || ||| |||| | | || | || Sbjct 122241 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 122182 Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||||| || | || || ||||| | ||| || ||| ||||| || ||| | Sbjct 122181 CGGATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAA 122122 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||| || | | |||||||| || |||||||| | ||| || || || ||||| || | Sbjct 122121 TGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGA 122062 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 75888 | ||||| | ||| | | ||||| | | || ||||||| || | | |||||| Sbjct 122061 TATCAATAGAGAATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATC 122002 Query 75889 CCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGC 75945 ||||| | || |||| ||| |||| | ||| |||||| ||| || || || || Sbjct 122001 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 121942 Query 75946 ATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTC 76005 | || || |||||||||||| | || | ||||| || || || || || || || Sbjct 121941 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 121882 Query 76006 TAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTCAAGA 76063 | || | ||||| || ||| || || | ||||| || |||| || | ||| Sbjct 121881 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 121822 Query 76064 CTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 || | | || | | | | || || ||||| || || |||| ||||| || Sbjct 121821 CT--CGTATGGCATACGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 121764 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 | || | |||||| ||| || || | |||| || || ||||| || || Sbjct 121763 AATGGACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCA 121704 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 76243 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 121703 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 121644 Query 76244 AA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 || | || | ||||| | ||| | ||| | ||||| || |||||||||||| Sbjct 121643 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 121584 Query 76298 GCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 || || || | | || | | |||| ||| || || ||||||| ||||| | | Sbjct 121583 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 121526 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAACAA 76412 ||||||| | ||||| ||||| || |||| || || || || |||||| || || Sbjct 121525 TAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAATAA 121469 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA 76472 | || || || || ||||| || | | | || | ||| | | ||| || || Sbjct 121468 ATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT- 121412 Query 76473 TTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 | || | ||| || || | | | | ||||| | | ||||| | | ||| ||| Sbjct 121411 TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCA 121353 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || ||||||||||| | ||| || ||||||| || ||||| | | ||| || | Sbjct 121352 TCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGA 121293 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 || | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| || Sbjct 121292 TCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGA 121233 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 ||| ||||| ||||| |||||| ||| || | ||||| | || |||| Sbjct 121232 CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACG 121173 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||| | ||| || || || |||| || || || || ||||| ||| Sbjct 121172 TGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATA 121113 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 || || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||||| Sbjct 121112 TACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTT 121053 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 ||||| |||||| ||| | | | ||||||||| | | | || | || ||| Sbjct 121052 GTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCT 120993 Query 76889 GCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 || | ||| | || | ||| ||| | ||||||| |||| || | ||| || Sbjct 120992 GCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAAT 120935 Query 76947 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 | || || | || | |||||| ||||||||| | | || |||| ||||| Sbjct 120934 CTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAA 120875 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 120874 AGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTG 120815 Query 77067 CTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 | ||||| ||||| | |||||| || || || ||||||| | ||| || |||| Sbjct 120814 CAGCTTCAATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTC 120755 Query 77127 GTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCA 77185 ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || || Sbjct 120754 TTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCA 120696 Query 77186 AAATAGTTGTATGAAAAGTCTCTT 77209 ||||| | ||| ||| ||| || Sbjct 120695 AAATAATCATATTCAAAATCTTTT 120672 >seq123 Length=14370 Score = 223 bits (246), Expect = 5e-53 Identities = 588/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 8477 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 8536 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 8537 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 8596 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 8597 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 8655 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | | ||||| || || || | || || |||| || |||||| | | Sbjct 8656 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 8715 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 8716 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 8772 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||| ||| ||| || |||||||| | |||||| Sbjct 8773 TTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAAT 8832 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 8833 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 8891 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 8892 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 8951 Query 46787 CGTAACTGGCATCATTATGAATCCA-CCTTTGA---GCCCAATCAGCCTTTTTCTTTACA 46842 | || ||| || |||| || || || | ||||| || || || || || ||| Sbjct 8952 CAAAA----GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACA 9007 Query 46843 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 || || || | |||||| | | ||| | | |||| ||| |||| Sbjct 9008 GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATATAT 9067 Query 46903 GTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 |||| || | || || ||| |||| ||| || | |||||||| ||| ||||| Sbjct 9068 CTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAG 9125 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | ||| | ||| ||||| | || |||| ||| || || | | | || || | Sbjct 9126 CATAATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTT 9185 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | | || || |||||||| |||||||| ||||| || || | ||| ||||||| | ||| Sbjct 9186 CCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTT 9245 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 || | | || | | ||| || | |||||| || ||| | ||||||| Sbjct 9246 CAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAA 9305 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 ||| ||||| || || |||||||||||||| ||| ||||| Sbjct 9306 CCCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 9348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929890689920