Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483505.1_202015-12- 30] 506 sequences; 8,861,795 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq123 259 5e-64 >seq123 Length=14370 Score = 259 bits (286), Expect = 5e-64 Identities = 596/879 (68%), Gaps = 59/879 (7%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| ||||| | ||||||| || || || ||||| | | ||| ||| | Sbjct 8505 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 8564 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTAA 23336 |||| ||||||| ||||||||| || || | ||| | || || | || Sbjct 8565 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATT--TTTGGAATATCCAAGGCA---AA 8619 Query 23337 AAGC---CTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTA 23392 ||| ||||| || ||||||||||||||||| ||| || || | |||| ||||| | Sbjct 8620 AAGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAA 8678 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTTT 23450 | || | || |||| | ||| | ||||| ||||| ||||| |||||| ||| Sbjct 8679 TAAGATCAACAGGAAGAGAGTCACA-AAGAA-AGTTTCTTTCAACTTCAACAGCTTCTGA 8736 Query 23451 AATTATTTGAACAATAACTTCTTCACTAGGTG--GATATTTTAAATAC-------TTAAA 23501 || ||||| || | | ||||| | | || ||||||| ||| | Sbjct 8737 TATGATTTG---------TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATA 8787 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 | |||||| ||||| ||| ||| || |||||||| | |||||| | |||||||||||| Sbjct 8788 TATTAAACAAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAA 8847 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGG 23620 ||| | ||| ||||| | ||| |||||||||| |||||| |||||| |||| | | || | Sbjct 8848 TGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAG 8906 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680 |||| | ||| || |||||||| || | | || | | | |||| | | | || Sbjct 8907 AAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGAT-CGTT-- 8963 Query 23681 AATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 ||||| |||||||| ||| ||| | || ||| ||| ||| ||||| Sbjct 8964 ---CAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAG 9020 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATTA 23794 |||||||| ||||| | ||| ||||| | |||| || |||||| ||||||| | Sbjct 9021 AAATTGCTTCAAAGAGCA---TTTGACGTTCTTTAATATCAGTAATATATCTATCAATAA 9077 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 |||| ||| ||||| ||| || | |||||||| || ||||| ||||| | || Sbjct 9078 GTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTC 9137 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 | ||||| | | ||| | || ||| || || ||||| ||||| ||||||| | Sbjct 9138 TGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATGC 9197 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| ||||||||||| || | || ||||| ||||||||||||||| || || Sbjct 9198 CATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCA-GGGTCTTTA 9256 Query 23975 A-TTTTTTCCAATCATTAATATCTTTTGATAAATCAA---CTTCATCAACTGTCCAAAAA 24030 | ||| |||||| || |||||| || ||||| ||||| ||| |||||| Sbjct 9257 AGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAAC---CCAAAAT 9313 Query 24031 CTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 ||| || ||||||||| ||||||||| ||| Sbjct 9314 GATGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 9352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484701588400