Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001483515.1_202015-12- 30] 53 sequences; 9,059,225 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq27 136 4e-27 >seq27 Length=1279890 Score = 136 bits (150), Expect = 4e-27 Identities = 559/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || |||| ||| | |||||||||||||||||||| || | | || ||| | Sbjct 168569 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 168628 Query 15972 CCATAAAATCAAAGGGATTAGTA--GCTGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| ||||||| ||||||| | | || | || | || || || || || | || Sbjct 168629 CCATCCAATCAAAAGGATTAGAAACGTTGTAGAT-TTTTGGAATATCCAAG-GCAAAAAG 168686 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTC-GCAATTAATTCCTATAA 16088 ||||||||| || |||||||| |||||||| || |||||| | || || || |||| Sbjct 168687 TAATCTATCAGCAACAAATTCAATATATTGGGCCA-TAAGTCTTGAGTTCATACCAATAA 168745 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || ||||||| | | ||| | | ||| | |||| |||||| |||| Sbjct 168746 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 168805 Query 16149 TATCGGTG-GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | | | || ||| | | | | || || ||| |||| | |||| ||| || Sbjct 168806 T-TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAAGCA 168864 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| ||| || ||||| || | || |||||||| || ||||| || | || ||| Sbjct 168865 AAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAGGC 168924 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || ||| ||||| || | ||| || || ||| ||| || ||||| | || || Sbjct 168925 ATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTCCT 168984 Query 16328 TCAACAGATGCAAAAGCGATTAA-TCGTTCCGCGTACGTAGCATC-TTTATTACGAATCC 16385 ||||||| || || | | ||| || ||| || | | ||| || | | |||| Sbjct 168985 TCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAG----ATCGTTCAGAATTCATCC 169039 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 |||| | ||||||| ||||| | ||| | | || || || || | ||| | Sbjct 169040 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 169099 Query 16446 --ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 |||| | ||| | |||||| | ||||| ||||||| ||||| || |||| Sbjct 169100 GCATTTGAC--GTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTTC 169157 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 ||||| | || || | || ||||| |||| | || || || | |||||| Sbjct 169158 ACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATTTG 169217 Query 16564 TACT--TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || | || | | ||| | | | || | ||| || | || || || |||||||||||| Sbjct 169218 TATTTCTCTAAGGAAATT--TACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGCA 169275 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAA 16678 || || || || | || || || |||| | |||| ||| | ||||| | | |||| Sbjct 169276 AAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTC---TTTAAGACTTTCCCAA 169332 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 ||| | ||||| || ||| | ||||| | |||||| || | || ||| Sbjct 169333 TCTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTT 169392 Query 16739 TTATACATTTTCCAAATATCATT 16761 ||||||||| ||||||||| || Sbjct 169393 TTATACATTGACCAAATATCTTT 169415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414061187960